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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
386.8
Sample id
Sample description
nTPM
Amygdala nTPM: 282.5
2814
Male, age 76, right hemisphere
442.5
1987
Female, age 91, left hemisphere
303.1
2514
Male, age 75, right hemisphere
241.8
2517
Female, age 94, left hemisphere
231.6
2695
Female, age 67, right hemisphere
193.4
Basal amygdala nTPM: 366.8
2110
Male, age 80, left hemisphere
549.9
2243
Female, age 91, right hemisphere
502.7
2685
Female, age 94, left hemisphere
379.3
1955
Male, age 76, both hemispheres
370.9
2827
Female, age 67, right hemisphere
227.0
2609
Male, age 75, right hemisphere
170.9
Central amygdala nTPM: 321.8
1905
Male, age 76, both hemispheres
433.8
2701
Female, age 91, right hemisphere
374.1
2239
Male, age 80, left hemisphere
363.6
2826
Female, age 94, left hemisphere
247.8
2515
Male, age 75, right hemisphere
189.6
Corticomedial amygdala nTPM: 386.8
2535
Female, age 67, right hemisphere
513.4
2829
Male, age 80, left hemisphere
431.1
2242
Female, age 91, right hemisphere
428.6
2240
Male, age 76, both hemispheres
387.8
2429
Female, age 94, left hemisphere
374.1
2428
Male, age 75, right hemisphere
185.7
Lateral amygdala nTPM: 286.9
1883
Male, age 76, both hemispheres
446.7
2534
Female, age 94, left hemisphere
400.4
2255
Female, age 91, right hemisphere
333.7
2256
Male, age 80, left hemisphere
267.9
2830
Female, age 67, right hemisphere
150.9
2516
Male, age 75, right hemisphere
121.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 82.3
Samples: 181
Max nTPM: 253.6
Min nTPM: 4.4
Std nTPM: 54.0
Median nTPM: 75.3
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
253.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
251.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
227.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
224.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
224.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
216.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
195.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
192.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
183.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
176.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
165.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
165.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
164.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
162.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
161.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
159.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
156.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
153.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
150.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
147.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
145.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
143.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
142.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
140.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
138.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
136.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
135.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
135.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
131.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
130.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
129.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
128.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
128.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
128.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
127.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
127.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
127.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
126.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
126.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
126.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
122.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
122.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
118.6
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
117.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
117.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
116.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
115.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
115.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
114.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
114.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
111.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
111.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
111.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
110.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
110.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
109.5
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
109.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
108.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
108.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
107.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
107.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
107.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
105.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
105.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
103.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
100.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
99.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
97.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
96.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
96.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
96.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
95.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
89.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
89.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
89.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
89.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
88.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
88.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
87.2
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
86.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
85.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
83.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
81.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
81.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
81.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
80.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
80.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
79.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
78.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
77.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
75.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
74.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
74.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
73.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
73.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
68.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
67.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
66.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
66.7
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
66.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
66.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
64.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
64.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
63.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
63.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
62.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
62.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
61.7
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
59.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
59.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
57.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
56.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
56.1
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
55.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
54.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
54.4
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
53.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
53.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
53.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
51.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
49.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
47.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
46.1
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
44.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
43.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
43.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
41.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
41.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
41.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
39.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
39.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
39.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
38.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
36.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
36.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
35.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
35.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
35.5
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
34.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
32.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
31.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
31.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
30.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
30.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
30.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
29.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
29.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
28.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
28.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
27.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
27.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
27.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
27.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
27.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
26.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
25.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
24.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
23.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
22.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
21.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
21.4
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
20.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
20.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
19.3
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
19.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
18.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
16.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
13.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
12.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
11.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
11.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
10.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
10.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
9.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
9.7
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
9.5
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
8.4
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
8.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
6.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
4.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
214.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 214.3
Samples: 4
Max nTPM: 341.3
Min nTPM: 159.1
Sample A
Female
341.3
Sample B
Female
159.1
Sample C
Male
192.6
Sample D
Male
164.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
483.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 483.1
Samples: 4
Max nTPM: 519.1
Min nTPM: 446.3
Sample A
Male
519.1
Sample B
Male
446.3
Sample C
Female
494.2
Sample D
Female
472.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
