MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.4 nTPM
HPA Brain:260.6 nTPM
GTEx:72.4 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:226.1 nTPM
Mouse:232.5 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 260.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.4
2219 Male, age 76, both hemispheres 300.4
1827 Male, age 72, unknown 219.0
2828 Female, age 72, unknown 184.4
2019 Male, age 18, unknown 183.7
2411 Female, age 72, unknown 113.9
2666 Male, age 74, left hemisphere 100.3
1833 Male, age 53, unknown 97.4
1870 Female, age 42, unknown 96.4
1830 Male, age 51, unknown 82.3
2586 Male, age 75, left hemisphere 56.4
Dorsal raphe nucleus
nTPM: 119.6
2298 Female, age 72, unknown 215.6
2750 Male, age 76, both hemispheres 174.7
2047 Male, age 72, unknown 109.2
2016 Female, age 72, unknown 52.4
1828 Male, age 53, unknown 46.1
Inferior colliculus
nTPM: 109.6
2097 Female, age 72, unknown 153.8
1848 Female, age 42, unknown 113.3
1890 Male, age 53, unknown 90.9
2849 Male, age 72, unknown 80.3
Median raphe nucleus
nTPM: 234.6
2220 Male, age 76, midline 234.6
Periaquaductal grey, anterior
nTPM: 167.3
2502 Female, age 75, unknown 196.6
1795 Male, age 51, unknown 163.2
1947 Male, age 18, unknown 142.1
Periaquaductal grey, dorsal
nTPM: 112.5
1831 Male, age 72, unknown 136.2
2850 Male, age 76, both hemispheres 113.6
1840 Male, age 53, unknown 108.5
2464 Female, age 72, unknown 91.5
Periaquaductal grey, lateral
nTPM: 87.0
2053 Male, age 18, unknown 100.0
2140 Male, age 76, both hemispheres 88.0
2272 Male, age 74, both hemispheres 72.8
Pretectal area
nTPM: 228.9
1816 Male, age 51, unknown 452.7
1944 Female, age 72, unknown 381.2
1815 Male, age 53, unknown 340.3
1817 Female, age 42, unknown 333.6
2007 Male, age 72, unknown 271.2
2667 Female, age 75, unknown 229.2
2224 Female, age 72, unknown 137.2
2316 Male, age 76, right hemisphere 115.3
2407 Male, age 75, both hemispheres 96.8
2825 Male, age 18, unknown 87.9
2273 Male, age 74, both hemispheres 72.7
Red nucleus
nTPM: 109.3
2785 Male, age 18, unknown 168.4
2503 Female, age 72, unknown 129.3
1904 Male, age 53, unknown 126.6
1821 Female, age 72, unknown 124.8
1954 Female, age 42, unknown 123.4
2823 Male, age 76, right hemisphere 114.6
2584 Male, age 75, left hemisphere 108.5
2725 Female, age 75, unknown 100.3
1865 Male, age 51, unknown 98.6
2227 Male, age 72, unknown 76.9
2769 Male, age 72, unknown 72.0
2588 Male, age 74, left hemisphere 68.1
Substantia nigra
nTPM: 260.6
1916 Female, age 42, unknown 406.7
1941 Male, age 53, unknown 382.8
2665 Male, age 74, both hemispheres 357.9
1889 Female, age 72, unknown 312.5
2409 Female, age 72, unknown 281.1
1851 Male, age 51, unknown 270.9
2241 Male, age 72, unknown 238.1
2699 Male, age 18, unknown 174.2
2590 Female, age 75, unknown 101.5
2583 Male, age 75, right hemisphere 80.1
Superior colliculus
nTPM: 180.0
2087 Female, age 72, unknown 369.0
1796 Male, age 53, unknown 276.4
2668 Female, age 75, unknown 267.4
2261 Male, age 18, unknown 200.6
1913 Female, age 42, unknown 151.5
1895 Male, age 76, right hemisphere 148.2
1995 Male, age 72, unknown 125.6
1839 Male, age 51, unknown 108.4
2587 Male, age 74, left hemisphere 77.5
2664 Male, age 75, both hemispheres 75.9
Ventral tegmental area
nTPM: 231.1
2218 Male, age 76, both hemispheres 410.6
2410 Female, age 72, unknown 311.4
1915 Female, age 42, unknown 234.5
1942 Male, age 51, unknown 184.7
2223 Female, age 72, unknown 130.8
2021 Male, age 53, unknown 114.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 183

Max nTPM: 380.1
Min nTPM: 0.3
Std nTPM: 81.6
Median nTPM: 40.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 380.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 364.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 353.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 338.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 330.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 328.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 319.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 293.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 241.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 222.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 210.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 226.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 205.5
Samples: 4

Max nTPM: 370.3
Min nTPM: 27.2
Sample A Female 272.5
Sample B Female 151.8
Sample C Male 370.3
Sample D Male 27.2
Midbrain
nTPM: 226.1
Samples: 4

Max nTPM: 480.4
Min nTPM: 48.0
Sample A Female 48.0
Sample B Female 116.4
Sample C Male 480.4
Sample D Male 259.5
Periaqueductal gray
nTPM: 93.3
Samples: 3

Max nTPM: 149.2
Min nTPM: 63.9
Sample B Female 66.8
Sample C Male 149.2
Sample D Male 63.9
Superior colliculi
nTPM: 220.6
Samples: 4

Max nTPM: 397.1
Min nTPM: 115.1
Sample A Female 115.1
Sample B Female 115.7
Sample C Male 397.1
Sample D Male 254.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 232.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.5
Samples: 4

Max nTPM: 258.8
Min nTPM: 207.1
Sample A Male 207.1
Sample B Male 232.4
Sample C Female 258.8
Sample D Female 231.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
1015 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 19.6
1014 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 18.8
1016 Sense, RPS_Baylor_37049, Mouse strain C57BL/6J (56 days, male) 0.0

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