BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.4 nTPM
HPA Brain:261.7 nTPM
GTEx:72.4 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Macaque:289.6 nTPM
Mouse:175.6 nTPM
Rat:229.2 nTPM
Pig:286.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 261.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 144.0
2219 Male, age 76, both hemispheres 302.2
1827 Male, age 72, unknown 219.9
2828 Female, age 72, unknown 185.2
2019 Male, age 18, unknown 184.4
2411 Female, age 72, unknown 114.1
2666 Male, age 74, left hemisphere 100.7
1833 Male, age 53, unknown 97.8
1870 Female, age 42, unknown 96.8
1830 Male, age 51, unknown 82.7
2586 Male, age 75, left hemisphere 56.7
Dorsal raphe nucleus
nTPM: 120.1
2298 Female, age 72, unknown 216.2
2750 Male, age 76, both hemispheres 175.7
2047 Male, age 72, unknown 109.7
2016 Female, age 72, unknown 52.6
1828 Male, age 53, unknown 46.3
Inferior colliculus
nTPM: 110.0
2097 Female, age 72, unknown 154.2
1848 Female, age 42, unknown 113.8
1890 Male, age 53, unknown 91.3
2849 Male, age 72, unknown 80.7
Median raphe nucleus
nTPM: 235.9
2220 Male, age 76, midline 235.9
Periaquaductal grey, anterior
nTPM: 168.0
2502 Female, age 75, unknown 197.5
1795 Male, age 51, unknown 163.9
1947 Male, age 18, unknown 142.7
Periaquaductal grey, dorsal
nTPM: 113.0
1831 Male, age 72, unknown 136.8
2850 Male, age 76, both hemispheres 114.4
1840 Male, age 53, unknown 108.9
2464 Female, age 72, unknown 91.8
Periaquaductal grey, lateral
nTPM: 87.4
2053 Male, age 18, unknown 100.5
2140 Male, age 76, both hemispheres 88.6
2272 Male, age 74, both hemispheres 73.1
Pretectal area
nTPM: 229.9
1816 Male, age 51, unknown 454.4
1944 Female, age 72, unknown 382.7
1815 Male, age 53, unknown 341.5
1817 Female, age 42, unknown 335.0
2007 Male, age 72, unknown 272.4
2667 Female, age 75, unknown 230.2
2224 Female, age 72, unknown 137.6
2316 Male, age 76, right hemisphere 116.0
2407 Male, age 75, both hemispheres 97.4
2825 Male, age 18, unknown 88.3
2273 Male, age 74, both hemispheres 73.0
Red nucleus
nTPM: 109.8
2785 Male, age 18, unknown 169.1
2503 Female, age 72, unknown 129.6
1904 Male, age 53, unknown 127.2
1821 Female, age 72, unknown 125.3
1954 Female, age 42, unknown 123.9
2823 Male, age 76, right hemisphere 115.3
2584 Male, age 75, left hemisphere 109.1
2725 Female, age 75, unknown 100.8
1865 Male, age 51, unknown 99.0
2227 Male, age 72, unknown 77.2
2769 Male, age 72, unknown 72.4
2588 Male, age 74, left hemisphere 68.3
Substantia nigra
nTPM: 261.7
1916 Female, age 42, unknown 408.7
1941 Male, age 53, unknown 384.4
2665 Male, age 74, both hemispheres 359.3
1889 Female, age 72, unknown 313.9
2409 Female, age 72, unknown 281.7
1851 Male, age 51, unknown 272.2
2241 Male, age 72, unknown 239.1
2699 Male, age 18, unknown 175.1
2590 Female, age 75, unknown 101.9
2583 Male, age 75, right hemisphere 80.5
Superior colliculus
nTPM: 180.9
2087 Female, age 72, unknown 370.6
1796 Male, age 53, unknown 277.6
2668 Female, age 75, unknown 268.6
2261 Male, age 18, unknown 201.4
1913 Female, age 42, unknown 152.2
1895 Male, age 76, right hemisphere 149.1
1995 Male, age 72, unknown 126.2
1839 Male, age 51, unknown 108.8
2587 Male, age 74, left hemisphere 77.7
2664 Male, age 75, both hemispheres 76.3
Ventral tegmental area
nTPM: 232.1
2218 Male, age 76, both hemispheres 413.0
2410 Female, age 72, unknown 312.3
1915 Female, age 42, unknown 235.5
1942 Male, age 51, unknown 185.6
2223 Female, age 72, unknown 131.4
2021 Male, age 53, unknown 114.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 183

Max nTPM: 380.1
Min nTPM: 0.3
Std nTPM: 81.6
Median nTPM: 40.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 380.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 364.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 353.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 338.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 330.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 328.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 319.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 293.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 241.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 222.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 210.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 289.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 289.6
Samples: 1

Max nTPM: 289.6
Min nTPM: 289.6
Sample A 289.6
Midbrain
nTPM: 133.8
Samples: 1

Max nTPM: 133.8
Min nTPM: 133.8
Sample A 133.8
Superior colliculi
nTPM: 262.2
Samples: 1

Max nTPM: 262.2
Min nTPM: 262.2
Sample A 262.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 286.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 266.3
Samples: 3

Max nTPM: 372.1
Min nTPM: 152.4
Sample A Female 274.3
Sample B Female 152.4
Sample C Male 372.1
Midbrain
nTPM: 286.2
Samples: 3

Max nTPM: 481.9
Min nTPM: 116.8
Sample B Female 116.8
Sample C Male 481.9
Sample D Male 260.0
Periaqueductal gray
nTPM: 93.5
Samples: 3

Max nTPM: 149.4
Min nTPM: 64.0
Sample B Female 67.0
Sample C Male 149.4
Sample D Male 64.0
Superior colliculi
nTPM: 221.8
Samples: 4

Max nTPM: 399.0
Min nTPM: 115.9
Sample A Female 115.9
Sample B Female 116.2
Sample C Male 399.0
Sample D Male 255.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 175.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 175.6
Samples: 4

Max nTPM: 198.7
Min nTPM: 155.4
Sample A 155.4
Sample B 164.2
Sample C 198.7
Sample D 184.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 229.2
Rat sample Sample description nTPM
Midbrain
nTPM: 229.2
Samples: 4

Max nTPM: 252.4
Min nTPM: 210.7
Sample A 252.4
Sample A 222.3
Sample A 210.7
Sample A 231.4

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