A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
46.2
nTPM
Monaco:
197.2
nTPM
Schmiedel:
90.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.2
HPA sample
nTPM
Memory B-cell nTPM: 46.2
Samples: 6
Max nTPM: 57.2
Min nTPM: 34.1
P10809_1017
47.1
P10809_1025
51.6
P10809_1044
35.6
P10809_1063
34.1
P10809_1092
51.7
P10809_1105
57.2
Naive B-cell nTPM: 34.5
Samples: 6
Max nTPM: 42.0
Min nTPM: 22.6
P10809_1011
30.4
P10809_1029
37.4
P10809_1048
38.8
P10809_1067
22.6
P10809_1091
35.6
P10809_1104
42.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
197.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 183.0
Samples: 4
Max nTPM: 223.5
Min nTPM: 168.7
RHH5310_R3677
223.5
RHH5218_R3590
170.2
RHH5247_R3619
168.7
RHH5276_R3648
169.7
Naive B-cell nTPM: 125.1
Samples: 4
Max nTPM: 148.6
Min nTPM: 87.5
RHH5308_R3675
124.9
RHH5216_R3588
139.3
RHH5245_R3617
87.5
RHH5274_R3646
148.6
Non-switched memory B-cell nTPM: 165.8
Samples: 4
Max nTPM: 203.7
Min nTPM: 140.0
RHH5309_R3676
203.7
RHH5217_R3589
152.0
RHH5246_R3618
140.0
RHH5275_R3647
167.6
Plasmablast nTPM: 85.0
Samples: 4
Max nTPM: 88.2
Min nTPM: 80.9
RHH5312_R3679
88.2
RHH5220_R3592
84.7
RHH5249_R3621
80.9
RHH5278_R3650
86.1
Switched memory B-cell nTPM: 197.2
Samples: 4
Max nTPM: 209.6
Min nTPM: 185.7
RHH5311_R3678
195.6
RHH5219_R3591
198.0
RHH5248_R3620
185.7
RHH5277_R3649
209.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
Schmiedel sample id
TPM
Naive B-cell TPM: 90.4
Samples: 91
Max TPM: 133.5
Min TPM: 35.9
B_CELL_NAIVE_1
133.5
B_CELL_NAIVE_2
128.2
B_CELL_NAIVE_3
125.2
B_CELL_NAIVE_4
121.2
B_CELL_NAIVE_5
121.0
B_CELL_NAIVE_6
119.4
B_CELL_NAIVE_7
118.3
B_CELL_NAIVE_8
117.3
B_CELL_NAIVE_9
116.4
B_CELL_NAIVE_10
115.5
B_CELL_NAIVE_11
115.0
B_CELL_NAIVE_12
113.9
B_CELL_NAIVE_13
111.8
B_CELL_NAIVE_14
111.3
B_CELL_NAIVE_15
111.2
B_CELL_NAIVE_16
110.0
B_CELL_NAIVE_17
109.3
B_CELL_NAIVE_18
109.1
B_CELL_NAIVE_19
108.9
B_CELL_NAIVE_20
108.5
B_CELL_NAIVE_21
107.8
B_CELL_NAIVE_22
107.3
B_CELL_NAIVE_23
106.9
B_CELL_NAIVE_24
105.1
B_CELL_NAIVE_25
104.6
B_CELL_NAIVE_26
104.3
B_CELL_NAIVE_27
104.2
B_CELL_NAIVE_28
103.6
B_CELL_NAIVE_29
101.8
B_CELL_NAIVE_30
101.4
B_CELL_NAIVE_31
101.1
B_CELL_NAIVE_32
100.7
B_CELL_NAIVE_33
100.3
B_CELL_NAIVE_34
98.5
B_CELL_NAIVE_35
97.9
B_CELL_NAIVE_36
97.8
B_CELL_NAIVE_37
96.8
B_CELL_NAIVE_38
96.5
B_CELL_NAIVE_39
96.1
B_CELL_NAIVE_40
96.0
B_CELL_NAIVE_41
95.6
B_CELL_NAIVE_42
95.5
B_CELL_NAIVE_43
94.6
B_CELL_NAIVE_44
94.3
B_CELL_NAIVE_45
93.2
B_CELL_NAIVE_46
93.2
B_CELL_NAIVE_47
92.7
B_CELL_NAIVE_48
91.4
B_CELL_NAIVE_49
91.3
B_CELL_NAIVE_50
90.6
B_CELL_NAIVE_51
89.5
B_CELL_NAIVE_52
89.5
B_CELL_NAIVE_53
89.4
B_CELL_NAIVE_54
88.8
B_CELL_NAIVE_55
88.7
B_CELL_NAIVE_56
87.9
B_CELL_NAIVE_57
87.6
B_CELL_NAIVE_58
85.4
B_CELL_NAIVE_59
84.3
B_CELL_NAIVE_60
83.4
B_CELL_NAIVE_61
82.8
B_CELL_NAIVE_62
81.9
B_CELL_NAIVE_63
81.8
B_CELL_NAIVE_64
81.0
B_CELL_NAIVE_65
80.5
B_CELL_NAIVE_66
80.3
B_CELL_NAIVE_67
76.5
B_CELL_NAIVE_68
76.5
B_CELL_NAIVE_69
75.7
B_CELL_NAIVE_70
75.6
B_CELL_NAIVE_71
75.3
B_CELL_NAIVE_72
74.9
B_CELL_NAIVE_73
73.1
B_CELL_NAIVE_74
71.4
B_CELL_NAIVE_75
71.4
B_CELL_NAIVE_76
71.2
B_CELL_NAIVE_77
68.0
B_CELL_NAIVE_78
67.3
B_CELL_NAIVE_79
67.1
B_CELL_NAIVE_80
64.2
B_CELL_NAIVE_81
59.6
B_CELL_NAIVE_82
57.3
B_CELL_NAIVE_83
56.8
B_CELL_NAIVE_84
56.1
B_CELL_NAIVE_85
54.2
B_CELL_NAIVE_86
54.1
B_CELL_NAIVE_87
54.0
B_CELL_NAIVE_88
49.5
B_CELL_NAIVE_89
49.4
B_CELL_NAIVE_90
43.7
B_CELL_NAIVE_91
35.9
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