A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
66.1
nTPM
Monaco:
212.6
nTPM
Schmiedel:
90.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.1
HPA sample
nTPM
Classical monocyte nTPM: 24.9
Samples: 6
Max nTPM: 29.5
Min nTPM: 18.4
P10809_1003
20.4
P10809_1020
28.1
P10809_1039
29.5
P10809_1058
18.4
P10809_1080
24.3
P10809_1107
28.8
Intermediate monocyte nTPM: 44.9
Samples: 6
Max nTPM: 72.2
Min nTPM: 27.6
P10809_1004
45.3
P10809_1023
43.1
P10809_1042
72.2
P10809_1061
27.6
P10809_1081
31.3
P10809_1108
50.0
Non-classical monocyte nTPM: 66.1
Samples: 5
Max nTPM: 80.4
Min nTPM: 50.2
P10809_1005
50.2
P10809_1053
80.4
P10809_1072
78.7
P10809_1082
53.5
P10809_1109
67.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
212.6
Monaco sample
nTPM
Classical monocyte nTPM: 145.4
Samples: 4
Max nTPM: 179.7
Min nTPM: 97.8
RHH5313_R3680
161.8
RHH5221_R3593
97.8
RHH5250_R3622
142.4
RHH5279_R3651
179.7
Intermediate monocyte nTPM: 155.3
Samples: 4
Max nTPM: 201.2
Min nTPM: 125.0
RHH5314_R3681
156.4
RHH5222_R3594
125.0
RHH5251_R3623
138.7
RHH5280_R3652
201.2
Non-classical monocyte nTPM: 212.6
Samples: 4
Max nTPM: 251.1
Min nTPM: 172.3
RHH5315_R3682
251.1
RHH5223_R3595
172.3
RHH5252_R3624
191.5
RHH5281_R3653
235.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
Schmiedel sample id
TPM
Classical monocyte TPM: 64.9
Samples: 91
Max TPM: 91.4
Min TPM: 34.4
MONOCYTES_1
91.4
MONOCYTES_2
90.3
MONOCYTES_3
90.1
MONOCYTES_4
89.8
MONOCYTES_5
89.5
MONOCYTES_6
86.6
MONOCYTES_7
85.4
MONOCYTES_8
84.5
MONOCYTES_9
84.1
MONOCYTES_10
82.4
MONOCYTES_11
82.3
MONOCYTES_12
82.0
MONOCYTES_13
81.4
MONOCYTES_14
80.3
MONOCYTES_15
79.4
MONOCYTES_16
77.9
MONOCYTES_17
77.1
MONOCYTES_18
76.9
MONOCYTES_19
76.8
MONOCYTES_20
74.5
MONOCYTES_21
73.6
MONOCYTES_22
72.7
MONOCYTES_23
72.5
MONOCYTES_24
72.3
MONOCYTES_25
72.0
MONOCYTES_26
71.6
MONOCYTES_27
71.3
MONOCYTES_28
70.5
MONOCYTES_29
70.1
MONOCYTES_30
70.0
MONOCYTES_31
69.7
MONOCYTES_32
69.7
MONOCYTES_33
69.6
MONOCYTES_34
69.5
MONOCYTES_35
69.3
MONOCYTES_36
68.8
MONOCYTES_37
68.3
MONOCYTES_38
68.2
MONOCYTES_39
68.1
MONOCYTES_40
68.1
MONOCYTES_41
67.7
MONOCYTES_42
67.3
MONOCYTES_43
66.8
MONOCYTES_44
66.3
MONOCYTES_45
65.9
MONOCYTES_46
64.5
MONOCYTES_47
63.8
MONOCYTES_48
63.4
MONOCYTES_49
63.3
MONOCYTES_50
63.1
MONOCYTES_51
62.7
MONOCYTES_52
62.1
MONOCYTES_53
61.9
MONOCYTES_54
61.2
MONOCYTES_55
61.0
MONOCYTES_56
60.7
MONOCYTES_57
59.9
MONOCYTES_58
59.3
MONOCYTES_59
59.1
MONOCYTES_60
58.6
MONOCYTES_61
58.5
MONOCYTES_62
58.4
MONOCYTES_63
58.3
MONOCYTES_64
58.2
MONOCYTES_65
57.5
MONOCYTES_66
56.9
MONOCYTES_67
56.6
MONOCYTES_68
56.5
MONOCYTES_69
56.0
MONOCYTES_70
55.6
MONOCYTES_71
55.3
MONOCYTES_72
54.3
MONOCYTES_73
52.9
MONOCYTES_74
52.6
MONOCYTES_75
52.6
MONOCYTES_76
52.5
MONOCYTES_77
52.2
MONOCYTES_78
52.2
MONOCYTES_79
50.7
MONOCYTES_80
50.6
MONOCYTES_81
49.5
MONOCYTES_82
48.3
MONOCYTES_83
47.2
MONOCYTES_84
45.9
MONOCYTES_85
45.8
MONOCYTES_86
43.8
MONOCYTES_87
42.9
MONOCYTES_88
42.8
MONOCYTES_89
40.7
MONOCYTES_90
36.0
MONOCYTES_91
34.4
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Non-classical monocyte TPM: 90.4
Samples: 90
Max TPM: 128.8
Min TPM: 50.4
M2_1
128.8
M2_2
125.8
M2_3
125.4
M2_4
121.4
M2_5
121.0
M2_6
120.5
M2_7
120.3
M2_8
120.1
M2_9
116.7
M2_10
113.7
M2_11
111.9
M2_12
111.3
M2_13
110.3
M2_14
109.5
M2_15
108.1
M2_16
107.9
M2_17
107.2
M2_18
106.5
M2_19
106.3
M2_20
106.0
M2_21
105.9
M2_22
105.2
M2_23
104.3
M2_24
102.9
M2_25
101.3
M2_26
100.1
M2_27
99.1
M2_28
98.4
M2_29
98.4
M2_30
98.2
M2_31
98.1
M2_32
97.5
M2_33
97.0
M2_34
96.6
M2_35
96.3
M2_36
96.1
M2_37
95.3
M2_38
95.2
M2_39
94.6
M2_40
94.1
M2_41
93.4
M2_42
92.5
M2_43
92.4
M2_44
91.4
M2_45
90.2
M2_46
90.1
M2_47
89.9
M2_48
89.9
M2_49
89.7
M2_50
89.6
M2_51
89.0
M2_52
87.9
M2_53
87.7
M2_54
87.2
M2_55
87.0
M2_56
85.9
M2_57
85.1
M2_58
85.0
M2_59
83.7
M2_60
83.5
M2_61
83.3
M2_62
83.2
M2_63
82.5
M2_64
82.1
M2_65
80.9
M2_66
80.6
M2_67
80.4
M2_68
80.0
M2_69
79.7
M2_70
74.1
M2_71
73.0
M2_72
72.8
M2_73
72.2
M2_74
72.1
M2_75
68.6
M2_76
67.9
M2_77
67.4
M2_78
66.5
M2_79
66.4
M2_80
64.7
M2_81
64.6
M2_82
64.5
M2_83
63.5
M2_84
63.5
M2_85
62.9
M2_86
59.5
M2_87
58.4
M2_88
57.2
M2_89
53.2
M2_90
50.4
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