A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.6
nTPM
Monaco:
552.5
nTPM
Schmiedel:
357.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.6
HPA sample
nTPM
NK-cell nTPM: 77.6
Samples: 6
Max nTPM: 100.1
Min nTPM: 58.0
P10809_1013
58.0
P10809_1033
95.7
P10809_1052
73.1
P10809_1071
80.3
P10809_1093
58.2
P10809_1103
100.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
552.5
Monaco sample
nTPM
NK-cell nTPM: 552.5
Samples: 4
Max nTPM: 577.9
Min nTPM: 524.7
RHH5316_R3683
565.5
RHH5224_R3596
577.9
RHH5253_R3625
524.7
RHH5282_R3654
541.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
357.3
Schmiedel sample id
TPM
NK-cell TPM: 357.3
Samples: 90
Max TPM: 503.7
Min TPM: 179.7
NK_1
503.7
NK_2
475.8
NK_3
469.2
NK_4
459.2
NK_5
457.7
NK_6
448.2
NK_7
437.6
NK_8
435.9
NK_9
431.8
NK_10
431.3
NK_11
428.8
NK_12
427.7
NK_13
424.6
NK_14
423.8
NK_15
423.3
NK_16
422.4
NK_17
422.2
NK_18
415.0
NK_19
413.9
NK_20
412.4
NK_21
410.4
NK_22
408.6
NK_23
407.0
NK_24
406.5
NK_25
405.3
NK_26
400.0
NK_27
399.2
NK_28
398.1
NK_29
397.0
NK_30
394.6
NK_31
394.4
NK_32
393.0
NK_33
381.1
NK_34
381.1
NK_35
377.8
NK_36
377.3
NK_37
376.7
NK_38
375.3
NK_39
373.1
NK_40
371.2
NK_41
369.4
NK_42
368.5
NK_43
364.7
NK_44
364.3
NK_45
364.1
NK_46
361.2
NK_47
361.0
NK_48
360.4
NK_49
358.9
NK_50
354.0
NK_51
351.5
NK_52
349.2
NK_53
348.9
NK_54
348.5
NK_55
347.7
NK_56
346.5
NK_57
341.2
NK_58
339.1
NK_59
338.2
NK_60
335.5
NK_61
329.8
NK_62
325.9
NK_63
325.0
NK_64
324.4
NK_65
320.4
NK_66
319.2
NK_67
314.3
NK_68
311.9
NK_69
303.3
NK_70
303.1
NK_71
302.2
NK_72
299.4
NK_73
295.9
NK_74
294.9
NK_75
291.7
NK_76
288.9
NK_77
288.3
NK_78
287.0
NK_79
272.2
NK_80
271.9
NK_81
271.6
NK_82
267.9
NK_83
263.3
NK_84
261.4
NK_85
260.0
NK_86
252.8
NK_87
243.9
NK_88
238.1
NK_89
185.2
NK_90
179.7
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