A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
20.8
nTPM
Schmiedel:
75.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
Memory B-cell nTPM: 7.8
Samples: 6
Max nTPM: 10.8
Min nTPM: 4.9
P10809_1017
6.8
P10809_1025
9.1
P10809_1044
4.9
P10809_1063
10.8
P10809_1092
8.8
P10809_1105
6.5
Naive B-cell nTPM: 9.6
Samples: 6
Max nTPM: 13.1
Min nTPM: 7.4
P10809_1011
8.3
P10809_1029
11.3
P10809_1048
8.9
P10809_1067
7.4
P10809_1091
13.1
P10809_1104
8.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.3
Samples: 4
Max nTPM: 17.4
Min nTPM: 5.5
RHH5310_R3677
15.7
RHH5218_R3590
17.4
RHH5247_R3619
5.5
RHH5276_R3648
10.8
Naive B-cell nTPM: 15.7
Samples: 4
Max nTPM: 17.3
Min nTPM: 12.7
RHH5308_R3675
16.8
RHH5216_R3588
16.0
RHH5245_R3617
12.7
RHH5274_R3646
17.3
Non-switched memory B-cell nTPM: 17.3
Samples: 4
Max nTPM: 20.2
Min nTPM: 13.6
RHH5309_R3676
13.6
RHH5217_R3589
15.2
RHH5246_R3618
20.2
RHH5275_R3647
20.0
Plasmablast nTPM: 19.8
Samples: 4
Max nTPM: 33.3
Min nTPM: 11.5
RHH5312_R3679
14.0
RHH5220_R3592
33.3
RHH5249_R3621
20.5
RHH5278_R3650
11.5
Switched memory B-cell nTPM: 20.8
Samples: 4
Max nTPM: 26.6
Min nTPM: 12.8
RHH5311_R3678
22.3
RHH5219_R3591
26.6
RHH5248_R3620
12.8
RHH5277_R3649
21.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.7
Schmiedel sample id
TPM
Naive B-cell TPM: 75.7
Samples: 91
Max TPM: 96.2
Min TPM: 38.2
B_CELL_NAIVE_1
96.2
B_CELL_NAIVE_2
96.1
B_CELL_NAIVE_3
94.9
B_CELL_NAIVE_4
94.7
B_CELL_NAIVE_5
94.6
B_CELL_NAIVE_6
92.5
B_CELL_NAIVE_7
91.3
B_CELL_NAIVE_8
90.2
B_CELL_NAIVE_9
89.9
B_CELL_NAIVE_10
89.9
B_CELL_NAIVE_11
89.7
B_CELL_NAIVE_12
89.4
B_CELL_NAIVE_13
88.0
B_CELL_NAIVE_14
87.8
B_CELL_NAIVE_15
87.4
B_CELL_NAIVE_16
87.3
B_CELL_NAIVE_17
87.0
B_CELL_NAIVE_18
87.0
B_CELL_NAIVE_19
86.9
B_CELL_NAIVE_20
86.7
B_CELL_NAIVE_21
86.1
B_CELL_NAIVE_22
85.6
B_CELL_NAIVE_23
84.4
B_CELL_NAIVE_24
84.3
B_CELL_NAIVE_25
83.2
B_CELL_NAIVE_26
83.2
B_CELL_NAIVE_27
83.1
B_CELL_NAIVE_28
83.1
B_CELL_NAIVE_29
83.0
B_CELL_NAIVE_30
82.6
B_CELL_NAIVE_31
82.1
B_CELL_NAIVE_32
82.1
B_CELL_NAIVE_33
81.9
B_CELL_NAIVE_34
81.8
B_CELL_NAIVE_35
81.8
B_CELL_NAIVE_36
81.6
B_CELL_NAIVE_37
81.6
B_CELL_NAIVE_38
81.4
B_CELL_NAIVE_39
80.1
B_CELL_NAIVE_40
80.0
B_CELL_NAIVE_41
79.9
B_CELL_NAIVE_42
79.3
B_CELL_NAIVE_43
79.3
B_CELL_NAIVE_44
79.2
B_CELL_NAIVE_45
78.7
B_CELL_NAIVE_46
78.7
B_CELL_NAIVE_47
78.0
B_CELL_NAIVE_48
77.5
B_CELL_NAIVE_49
77.5
B_CELL_NAIVE_50
77.0
B_CELL_NAIVE_51
76.6
B_CELL_NAIVE_52
75.9
B_CELL_NAIVE_53
75.6
B_CELL_NAIVE_54
75.4
B_CELL_NAIVE_55
74.9
B_CELL_NAIVE_56
74.7
B_CELL_NAIVE_57
74.4
B_CELL_NAIVE_58
74.3
B_CELL_NAIVE_59
73.5
B_CELL_NAIVE_60
73.1
B_CELL_NAIVE_61
72.3
B_CELL_NAIVE_62
71.8
B_CELL_NAIVE_63
71.3
B_CELL_NAIVE_64
71.0
B_CELL_NAIVE_65
70.9
B_CELL_NAIVE_66
69.8
B_CELL_NAIVE_67
69.2
B_CELL_NAIVE_68
69.1
B_CELL_NAIVE_69
69.0
B_CELL_NAIVE_70
66.5
B_CELL_NAIVE_71
66.4
B_CELL_NAIVE_72
65.8
B_CELL_NAIVE_73
64.5
B_CELL_NAIVE_74
64.3
B_CELL_NAIVE_75
63.7
B_CELL_NAIVE_76
63.3
B_CELL_NAIVE_77
62.4
B_CELL_NAIVE_78
61.7
B_CELL_NAIVE_79
60.6
B_CELL_NAIVE_80
60.5
B_CELL_NAIVE_81
59.7
B_CELL_NAIVE_82
59.6
B_CELL_NAIVE_83
58.5
B_CELL_NAIVE_84
56.1
B_CELL_NAIVE_85
56.1
B_CELL_NAIVE_86
51.3
B_CELL_NAIVE_87
50.3
B_CELL_NAIVE_88
47.8
B_CELL_NAIVE_89
45.3
B_CELL_NAIVE_90
41.0
B_CELL_NAIVE_91
38.2
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The Human Protein Atlas project is funded
