A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.6
nTPM
Monaco:
28.0
nTPM
Schmiedel:
62.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.6
HPA sample
nTPM
Classical monocyte nTPM: 12.6
Samples: 6
Max nTPM: 16.5
Min nTPM: 10.6
P10809_1003
13.2
P10809_1020
10.6
P10809_1039
12.1
P10809_1058
11.3
P10809_1080
16.5
P10809_1107
11.8
Intermediate monocyte nTPM: 12.2
Samples: 6
Max nTPM: 13.4
Min nTPM: 11.0
P10809_1004
11.8
P10809_1023
13.4
P10809_1042
11.8
P10809_1061
12.2
P10809_1081
12.7
P10809_1108
11.0
Non-classical monocyte nTPM: 10.8
Samples: 5
Max nTPM: 14.4
Min nTPM: 7.4
P10809_1005
9.5
P10809_1053
14.4
P10809_1072
7.4
P10809_1082
10.9
P10809_1109
11.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Monaco sample
nTPM
Classical monocyte nTPM: 28.0
Samples: 4
Max nTPM: 41.2
Min nTPM: 18.9
RHH5313_R3680
29.7
RHH5221_R3593
41.2
RHH5250_R3622
22.3
RHH5279_R3651
18.9
Intermediate monocyte nTPM: 27.4
Samples: 4
Max nTPM: 31.6
Min nTPM: 15.3
RHH5314_R3681
31.1
RHH5222_R3594
31.6
RHH5251_R3623
15.3
RHH5280_R3652
31.6
Non-classical monocyte nTPM: 24.2
Samples: 4
Max nTPM: 34.4
Min nTPM: 12.3
RHH5315_R3682
27.2
RHH5223_R3595
34.4
RHH5252_R3624
12.3
RHH5281_R3653
22.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.4
Schmiedel sample id
TPM
Classical monocyte TPM: 61.6
Samples: 91
Max TPM: 76.5
Min TPM: 44.3
MONOCYTES_1
76.5
MONOCYTES_2
75.8
MONOCYTES_3
75.4
MONOCYTES_4
72.3
MONOCYTES_5
71.9
MONOCYTES_6
71.5
MONOCYTES_7
71.1
MONOCYTES_8
71.1
MONOCYTES_9
70.6
MONOCYTES_10
70.4
MONOCYTES_11
70.3
MONOCYTES_12
70.1
MONOCYTES_13
69.9
MONOCYTES_14
69.8
MONOCYTES_15
69.3
MONOCYTES_16
69.0
MONOCYTES_17
69.0
MONOCYTES_18
68.2
MONOCYTES_19
68.0
MONOCYTES_20
67.8
MONOCYTES_21
67.7
MONOCYTES_22
67.5
MONOCYTES_23
67.3
MONOCYTES_24
67.3
MONOCYTES_25
67.0
MONOCYTES_26
66.8
MONOCYTES_27
66.7
MONOCYTES_28
66.6
MONOCYTES_29
66.4
MONOCYTES_30
66.2
MONOCYTES_31
66.1
MONOCYTES_32
66.0
MONOCYTES_33
65.9
MONOCYTES_34
65.6
MONOCYTES_35
65.2
MONOCYTES_36
65.1
MONOCYTES_37
65.0
MONOCYTES_38
64.8
MONOCYTES_39
64.8
MONOCYTES_40
64.6
MONOCYTES_41
64.5
MONOCYTES_42
62.8
MONOCYTES_43
62.7
MONOCYTES_44
62.4
MONOCYTES_45
62.0
MONOCYTES_46
61.9
MONOCYTES_47
61.8
MONOCYTES_48
61.7
MONOCYTES_49
61.3
MONOCYTES_50
61.3
MONOCYTES_51
61.1
MONOCYTES_52
60.9
MONOCYTES_53
60.9
MONOCYTES_54
60.2
MONOCYTES_55
60.1
MONOCYTES_56
59.9
MONOCYTES_57
59.5
MONOCYTES_58
59.3
MONOCYTES_59
59.2
MONOCYTES_60
58.8
MONOCYTES_61
58.8
MONOCYTES_62
58.4
MONOCYTES_63
58.4
MONOCYTES_64
58.3
MONOCYTES_65
58.3
MONOCYTES_66
57.8
MONOCYTES_67
57.0
MONOCYTES_68
56.6
MONOCYTES_69
56.3
MONOCYTES_70
56.2
MONOCYTES_71
55.4
MONOCYTES_72
55.1
MONOCYTES_73
54.6
MONOCYTES_74
54.0
MONOCYTES_75
54.0
MONOCYTES_76
53.3
MONOCYTES_77
53.2
MONOCYTES_78
53.1
MONOCYTES_79
52.7
MONOCYTES_80
52.6
MONOCYTES_81
51.4
MONOCYTES_82
50.4
MONOCYTES_83
49.9
MONOCYTES_84
48.9
MONOCYTES_85
48.9
MONOCYTES_86
47.9
MONOCYTES_87
47.7
MONOCYTES_88
47.3
MONOCYTES_89
47.2
MONOCYTES_90
45.8
MONOCYTES_91
44.3
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Non-classical monocyte TPM: 62.4
Samples: 90
Max TPM: 79.6
Min TPM: 38.6
M2_1
79.6
M2_2
78.7
M2_3
78.2
M2_4
78.2
M2_5
77.6
M2_6
76.5
M2_7
75.9
M2_8
75.9
M2_9
75.1
M2_10
74.3
M2_11
73.8
M2_12
73.8
M2_13
73.2
M2_14
72.2
M2_15
72.1
M2_16
72.0
M2_17
71.2
M2_18
71.0
M2_19
70.9
M2_20
70.6
M2_21
70.5
M2_22
70.5
M2_23
70.0
M2_24
69.6
M2_25
69.1
M2_26
69.0
M2_27
69.0
M2_28
68.3
M2_29
67.9
M2_30
67.6
M2_31
67.4
M2_32
67.2
M2_33
67.2
M2_34
67.1
M2_35
67.1
M2_36
66.9
M2_37
66.3
M2_38
66.1
M2_39
65.9
M2_40
65.5
M2_41
65.1
M2_42
64.9
M2_43
64.7
M2_44
64.5
M2_45
63.9
M2_46
63.4
M2_47
62.9
M2_48
62.9
M2_49
62.3
M2_50
62.2
M2_51
62.2
M2_52
61.8
M2_53
61.8
M2_54
61.1
M2_55
60.4
M2_56
60.1
M2_57
60.0
M2_58
59.7
M2_59
59.6
M2_60
59.2
M2_61
59.0
M2_62
58.4
M2_63
58.3
M2_64
57.8
M2_65
57.5
M2_66
57.5
M2_67
57.4
M2_68
57.2
M2_69
56.6
M2_70
56.3
M2_71
52.0
M2_72
51.9
M2_73
51.9
M2_74
51.3
M2_75
51.0
M2_76
50.6
M2_77
50.2
M2_78
49.8
M2_79
49.7
M2_80
49.7
M2_81
49.6
M2_82
49.4
M2_83
48.1
M2_84
47.4
M2_85
45.4
M2_86
41.6
M2_87
41.5
M2_88
39.7
M2_89
39.2
M2_90
38.6
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