A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.2
nTPM
Monaco:
13.8
nTPM
Schmiedel:
75.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
HPA sample
nTPM
NK-cell nTPM: 12.2
Samples: 6
Max nTPM: 29.1
Min nTPM: 6.2
P10809_1013
7.9
P10809_1033
13.1
P10809_1052
6.2
P10809_1071
8.3
P10809_1093
29.1
P10809_1103
8.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.8
Monaco sample
nTPM
NK-cell nTPM: 13.8
Samples: 4
Max nTPM: 19.7
Min nTPM: 8.4
RHH5316_R3683
13.3
RHH5224_R3596
19.7
RHH5253_R3625
13.8
RHH5282_R3654
8.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.5
Schmiedel sample id
TPM
NK-cell TPM: 75.5
Samples: 90
Max TPM: 101.1
Min TPM: 39.1
NK_1
101.1
NK_2
98.5
NK_3
97.3
NK_4
96.3
NK_5
95.9
NK_6
95.1
NK_7
93.1
NK_8
92.9
NK_9
92.8
NK_10
92.1
NK_11
91.5
NK_12
91.3
NK_13
90.8
NK_14
90.7
NK_15
90.1
NK_16
89.9
NK_17
89.0
NK_18
89.0
NK_19
88.3
NK_20
88.0
NK_21
87.9
NK_22
87.6
NK_23
86.9
NK_24
86.4
NK_25
86.4
NK_26
85.3
NK_27
85.3
NK_28
84.6
NK_29
84.6
NK_30
84.4
NK_31
84.3
NK_32
82.8
NK_33
82.0
NK_34
81.8
NK_35
81.2
NK_36
80.8
NK_37
80.7
NK_38
79.6
NK_39
79.6
NK_40
79.4
NK_41
78.2
NK_42
78.1
NK_43
77.8
NK_44
76.8
NK_45
76.7
NK_46
76.5
NK_47
75.5
NK_48
74.8
NK_49
74.7
NK_50
74.2
NK_51
74.1
NK_52
73.7
NK_53
73.4
NK_54
72.8
NK_55
72.6
NK_56
72.3
NK_57
72.2
NK_58
72.1
NK_59
71.1
NK_60
70.9
NK_61
69.2
NK_62
68.6
NK_63
68.1
NK_64
67.9
NK_65
67.8
NK_66
66.8
NK_67
66.0
NK_68
65.5
NK_69
65.1
NK_70
63.9
NK_71
63.4
NK_72
62.8
NK_73
62.8
NK_74
62.7
NK_75
62.3
NK_76
61.3
NK_77
60.7
NK_78
60.3
NK_79
59.2
NK_80
58.6
NK_81
57.7
NK_82
57.5
NK_83
57.2
NK_84
50.5
NK_85
49.7
NK_86
49.6
NK_87
49.0
NK_88
48.5
NK_89
41.3
NK_90
39.1
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