A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
198.1
nTPM
Monaco:
288.3
nTPM
Schmiedel:
146.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
198.1
HPA sample
nTPM
Memory B-cell nTPM: 198.1
Samples: 6
Max nTPM: 303.0
Min nTPM: 104.1
P10809_1017
104.1
P10809_1025
182.7
P10809_1044
303.0
P10809_1063
195.5
P10809_1092
190.6
P10809_1105
212.9
Naive B-cell nTPM: 193.2
Samples: 6
Max nTPM: 329.9
Min nTPM: 106.4
P10809_1011
106.4
P10809_1029
168.7
P10809_1048
329.9
P10809_1067
170.8
P10809_1091
191.7
P10809_1104
191.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 242.1
Samples: 4
Max nTPM: 312.7
Min nTPM: 157.0
RHH5310_R3677
246.5
RHH5218_R3590
312.7
RHH5247_R3619
252.2
RHH5276_R3648
157.0
Naive B-cell nTPM: 236.1
Samples: 4
Max nTPM: 347.5
Min nTPM: 121.8
RHH5308_R3675
236.2
RHH5216_R3588
347.5
RHH5245_R3617
121.8
RHH5274_R3646
238.9
Non-switched memory B-cell nTPM: 288.3
Samples: 4
Max nTPM: 360.1
Min nTPM: 199.5
RHH5309_R3676
254.3
RHH5217_R3589
360.1
RHH5246_R3618
339.4
RHH5275_R3647
199.5
Plasmablast nTPM: 196.3
Samples: 4
Max nTPM: 239.7
Min nTPM: 165.8
RHH5312_R3679
181.7
RHH5220_R3592
239.7
RHH5249_R3621
197.8
RHH5278_R3650
165.8
Switched memory B-cell nTPM: 260.0
Samples: 4
Max nTPM: 345.2
Min nTPM: 190.5
RHH5311_R3678
228.5
RHH5219_R3591
345.2
RHH5248_R3620
275.7
RHH5277_R3649
190.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
146.2
Schmiedel sample id
TPM
Naive B-cell TPM: 146.2
Samples: 91
Max TPM: 213.7
Min TPM: 97.5
B_CELL_NAIVE_1
213.7
B_CELL_NAIVE_2
206.3
B_CELL_NAIVE_3
193.9
B_CELL_NAIVE_4
193.1
B_CELL_NAIVE_5
187.0
B_CELL_NAIVE_6
184.5
B_CELL_NAIVE_7
183.5
B_CELL_NAIVE_8
183.1
B_CELL_NAIVE_9
180.7
B_CELL_NAIVE_10
178.0
B_CELL_NAIVE_11
177.1
B_CELL_NAIVE_12
174.8
B_CELL_NAIVE_13
172.5
B_CELL_NAIVE_14
172.3
B_CELL_NAIVE_15
172.1
B_CELL_NAIVE_16
171.4
B_CELL_NAIVE_17
171.2
B_CELL_NAIVE_18
166.8
B_CELL_NAIVE_19
165.6
B_CELL_NAIVE_20
164.7
B_CELL_NAIVE_21
164.1
B_CELL_NAIVE_22
161.8
B_CELL_NAIVE_23
157.3
B_CELL_NAIVE_24
157.2
B_CELL_NAIVE_25
157.0
B_CELL_NAIVE_26
156.6
B_CELL_NAIVE_27
156.4
B_CELL_NAIVE_28
156.2
B_CELL_NAIVE_29
155.6
B_CELL_NAIVE_30
154.9
B_CELL_NAIVE_31
154.9
B_CELL_NAIVE_32
154.8
B_CELL_NAIVE_33
153.9
B_CELL_NAIVE_34
153.5
B_CELL_NAIVE_35
153.3
B_CELL_NAIVE_36
152.8
B_CELL_NAIVE_37
151.8
B_CELL_NAIVE_38
151.5
B_CELL_NAIVE_39
150.1
B_CELL_NAIVE_40
150.0
B_CELL_NAIVE_41
149.7
B_CELL_NAIVE_42
149.5
B_CELL_NAIVE_43
148.2
B_CELL_NAIVE_44
147.8
B_CELL_NAIVE_45
145.4
B_CELL_NAIVE_46
144.2
B_CELL_NAIVE_47
142.9
B_CELL_NAIVE_48
142.3
B_CELL_NAIVE_49
141.9
B_CELL_NAIVE_50
141.6
B_CELL_NAIVE_51
141.5
B_CELL_NAIVE_52
140.4
B_CELL_NAIVE_53
139.8
B_CELL_NAIVE_54
139.4
B_CELL_NAIVE_55
139.3
B_CELL_NAIVE_56
137.4
B_CELL_NAIVE_57
136.9
B_CELL_NAIVE_58
136.9
B_CELL_NAIVE_59
136.2
B_CELL_NAIVE_60
135.8
B_CELL_NAIVE_61
135.1
B_CELL_NAIVE_62
133.4
B_CELL_NAIVE_63
132.2
B_CELL_NAIVE_64
132.0
B_CELL_NAIVE_65
131.7
B_CELL_NAIVE_66
131.4
B_CELL_NAIVE_67
130.6
B_CELL_NAIVE_68
128.5
B_CELL_NAIVE_69
128.0
B_CELL_NAIVE_70
127.8
B_CELL_NAIVE_71
127.4
B_CELL_NAIVE_72
126.9
B_CELL_NAIVE_73
126.7
B_CELL_NAIVE_74
126.0
B_CELL_NAIVE_75
125.6
B_CELL_NAIVE_76
123.9
B_CELL_NAIVE_77
122.9
B_CELL_NAIVE_78
120.1
B_CELL_NAIVE_79
119.1
B_CELL_NAIVE_80
119.0
B_CELL_NAIVE_81
117.3
B_CELL_NAIVE_82
114.0
B_CELL_NAIVE_83
113.2
B_CELL_NAIVE_84
110.5
B_CELL_NAIVE_85
110.0
B_CELL_NAIVE_86
109.7
B_CELL_NAIVE_87
108.3
B_CELL_NAIVE_88
108.0
B_CELL_NAIVE_89
107.3
B_CELL_NAIVE_90
107.1
B_CELL_NAIVE_91
97.5
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