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BETA
  • SUMMARY

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  • BRAIN

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  • LAPTM4A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:198.1 nTPM
Monaco:288.3 nTPM
Schmiedel:146.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

198.1
HPA sample nTPM
Memory B-cell
nTPM: 198.1
Samples: 6

Max nTPM: 303.0
Min nTPM: 104.1
P10809_1017 104.1
P10809_1025 182.7
P10809_1044 303.0
P10809_1063 195.5
P10809_1092 190.6
P10809_1105 212.9
Naive B-cell
nTPM: 193.2
Samples: 6

Max nTPM: 329.9
Min nTPM: 106.4
P10809_1011 106.4
P10809_1029 168.7
P10809_1048 329.9
P10809_1067 170.8
P10809_1091 191.7
P10809_1104 191.5

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

288.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 242.1
Samples: 4

Max nTPM: 312.7
Min nTPM: 157.0
RHH5310_R3677 246.5
RHH5218_R3590 312.7
RHH5247_R3619 252.2
RHH5276_R3648 157.0
Naive B-cell
nTPM: 236.1
Samples: 4

Max nTPM: 347.5
Min nTPM: 121.8
RHH5308_R3675 236.2
RHH5216_R3588 347.5
RHH5245_R3617 121.8
RHH5274_R3646 238.9
Non-switched memory B-cell
nTPM: 288.3
Samples: 4

Max nTPM: 360.1
Min nTPM: 199.5
RHH5309_R3676 254.3
RHH5217_R3589 360.1
RHH5246_R3618 339.4
RHH5275_R3647 199.5
Plasmablast
nTPM: 196.3
Samples: 4

Max nTPM: 239.7
Min nTPM: 165.8
RHH5312_R3679 181.7
RHH5220_R3592 239.7
RHH5249_R3621 197.8
RHH5278_R3650 165.8
Switched memory B-cell
nTPM: 260.0
Samples: 4

Max nTPM: 345.2
Min nTPM: 190.5
RHH5311_R3678 228.5
RHH5219_R3591 345.2
RHH5248_R3620 275.7
RHH5277_R3649 190.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

146.2
Schmiedel sample id TPM
Naive B-cell
TPM: 146.2
Samples: 91

Max TPM: 213.7
Min TPM: 97.5
B_CELL_NAIVE_1 213.7
B_CELL_NAIVE_2 206.3
B_CELL_NAIVE_3 193.9
B_CELL_NAIVE_4 193.1
B_CELL_NAIVE_5 187.0
B_CELL_NAIVE_6 184.5
B_CELL_NAIVE_7 183.5
B_CELL_NAIVE_8 183.1
B_CELL_NAIVE_9 180.7
B_CELL_NAIVE_10 178.0
B_CELL_NAIVE_11 177.1
B_CELL_NAIVE_12 174.8
B_CELL_NAIVE_13 172.5
B_CELL_NAIVE_14 172.3
B_CELL_NAIVE_15 172.1
B_CELL_NAIVE_16 171.4
B_CELL_NAIVE_17 171.2
B_CELL_NAIVE_18 166.8
B_CELL_NAIVE_19 165.6
B_CELL_NAIVE_20 164.7
B_CELL_NAIVE_21 164.1
B_CELL_NAIVE_22 161.8
B_CELL_NAIVE_23 157.3
B_CELL_NAIVE_24 157.2
B_CELL_NAIVE_25 157.0
B_CELL_NAIVE_26 156.6
B_CELL_NAIVE_27 156.4
B_CELL_NAIVE_28 156.2
B_CELL_NAIVE_29 155.6
B_CELL_NAIVE_30 154.9
B_CELL_NAIVE_31 154.9
B_CELL_NAIVE_32 154.8
B_CELL_NAIVE_33 153.9
B_CELL_NAIVE_34 153.5
B_CELL_NAIVE_35 153.3
B_CELL_NAIVE_36 152.8
B_CELL_NAIVE_37 151.8
B_CELL_NAIVE_38 151.5
B_CELL_NAIVE_39 150.1
B_CELL_NAIVE_40 150.0
B_CELL_NAIVE_41 149.7
B_CELL_NAIVE_42 149.5
B_CELL_NAIVE_43 148.2
B_CELL_NAIVE_44 147.8
B_CELL_NAIVE_45 145.4
B_CELL_NAIVE_46 144.2
B_CELL_NAIVE_47 142.9
B_CELL_NAIVE_48 142.3
B_CELL_NAIVE_49 141.9
B_CELL_NAIVE_50 141.6
B_CELL_NAIVE_51 141.5
B_CELL_NAIVE_52 140.4
B_CELL_NAIVE_53 139.8
B_CELL_NAIVE_54 139.4
B_CELL_NAIVE_55 139.3
B_CELL_NAIVE_56 137.4
B_CELL_NAIVE_57 136.9
B_CELL_NAIVE_58 136.9
B_CELL_NAIVE_59 136.2
B_CELL_NAIVE_60 135.8
B_CELL_NAIVE_61 135.1
B_CELL_NAIVE_62 133.4
B_CELL_NAIVE_63 132.2
B_CELL_NAIVE_64 132.0
B_CELL_NAIVE_65 131.7
B_CELL_NAIVE_66 131.4
B_CELL_NAIVE_67 130.6
B_CELL_NAIVE_68 128.5
B_CELL_NAIVE_69 128.0
B_CELL_NAIVE_70 127.8
B_CELL_NAIVE_71 127.4
B_CELL_NAIVE_72 126.9
B_CELL_NAIVE_73 126.7
B_CELL_NAIVE_74 126.0
B_CELL_NAIVE_75 125.6
B_CELL_NAIVE_76 123.9
B_CELL_NAIVE_77 122.9
B_CELL_NAIVE_78 120.1
B_CELL_NAIVE_79 119.1
B_CELL_NAIVE_80 119.0
B_CELL_NAIVE_81 117.3
B_CELL_NAIVE_82 114.0
B_CELL_NAIVE_83 113.2
B_CELL_NAIVE_84 110.5
B_CELL_NAIVE_85 110.0
B_CELL_NAIVE_86 109.7
B_CELL_NAIVE_87 108.3
B_CELL_NAIVE_88 108.0
B_CELL_NAIVE_89 107.3
B_CELL_NAIVE_90 107.1
B_CELL_NAIVE_91 97.5
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