A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
124.7
nTPM
Monaco:
160.0
nTPM
Schmiedel:
142.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
124.7
HPA sample
nTPM
NK-cell nTPM: 124.7
Samples: 6
Max nTPM: 158.0
Min nTPM: 96.1
P10809_1013
96.1
P10809_1033
117.8
P10809_1052
108.1
P10809_1071
125.5
P10809_1093
142.8
P10809_1103
158.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.0
Monaco sample
nTPM
NK-cell nTPM: 160.0
Samples: 4
Max nTPM: 208.9
Min nTPM: 102.2
RHH5316_R3683
161.4
RHH5224_R3596
208.9
RHH5253_R3625
102.2
RHH5282_R3654
167.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.3
Schmiedel sample id
TPM
NK-cell TPM: 142.3
Samples: 90
Max TPM: 212.2
Min TPM: 97.2
NK_1
212.2
NK_2
211.1
NK_3
194.2
NK_4
193.9
NK_5
190.3
NK_6
188.0
NK_7
183.2
NK_8
180.9
NK_9
178.8
NK_10
176.6
NK_11
172.7
NK_12
172.1
NK_13
171.4
NK_14
171.3
NK_15
169.0
NK_16
167.7
NK_17
167.3
NK_18
167.0
NK_19
166.6
NK_20
165.3
NK_21
163.4
NK_22
162.5
NK_23
161.2
NK_24
160.7
NK_25
159.1
NK_26
155.5
NK_27
155.5
NK_28
155.1
NK_29
153.3
NK_30
153.3
NK_31
152.7
NK_32
150.4
NK_33
149.3
NK_34
148.5
NK_35
147.9
NK_36
147.3
NK_37
146.7
NK_38
146.6
NK_39
145.9
NK_40
145.7
NK_41
145.5
NK_42
145.4
NK_43
145.3
NK_44
142.9
NK_45
142.9
NK_46
141.0
NK_47
139.0
NK_48
137.4
NK_49
137.2
NK_50
136.8
NK_51
135.8
NK_52
135.7
NK_53
135.1
NK_54
135.0
NK_55
134.5
NK_56
130.3
NK_57
130.3
NK_58
129.5
NK_59
129.3
NK_60
128.6
NK_61
127.0
NK_62
126.9
NK_63
126.3
NK_64
125.3
NK_65
124.8
NK_66
124.2
NK_67
123.6
NK_68
123.2
NK_69
121.9
NK_70
121.2
NK_71
121.0
NK_72
117.4
NK_73
116.1
NK_74
112.4
NK_75
111.8
NK_76
111.8
NK_77
110.4
NK_78
110.3
NK_79
109.9
NK_80
109.2
NK_81
108.3
NK_82
108.2
NK_83
108.1
NK_84
105.8
NK_85
104.5
NK_86
102.1
NK_87
102.0
NK_88
99.6
NK_89
97.6
NK_90
97.2
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