A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
395.4
nTPM
Monaco:
732.9
nTPM
Schmiedel:
458.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
395.4
HPA sample
nTPM
Classical monocyte nTPM: 382.9
Samples: 6
Max nTPM: 455.1
Min nTPM: 321.4
P10809_1003
391.6
P10809_1020
401.6
P10809_1039
455.1
P10809_1058
321.4
P10809_1080
402.8
P10809_1107
325.0
Intermediate monocyte nTPM: 325.2
Samples: 6
Max nTPM: 393.7
Min nTPM: 255.4
P10809_1004
255.4
P10809_1023
393.7
P10809_1042
384.8
P10809_1061
276.0
P10809_1081
332.4
P10809_1108
308.6
Non-classical monocyte nTPM: 395.4
Samples: 5
Max nTPM: 577.8
Min nTPM: 276.0
P10809_1005
276.0
P10809_1053
383.2
P10809_1072
577.8
P10809_1082
342.3
P10809_1109
397.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
732.9
Monaco sample
nTPM
Classical monocyte nTPM: 732.9
Samples: 4
Max nTPM: 839.7
Min nTPM: 609.8
RHH5313_R3680
650.6
RHH5221_R3593
609.8
RHH5250_R3622
839.7
RHH5279_R3651
831.6
Intermediate monocyte nTPM: 557.6
Samples: 4
Max nTPM: 761.1
Min nTPM: 378.1
RHH5314_R3681
577.7
RHH5222_R3594
378.1
RHH5251_R3623
513.6
RHH5280_R3652
761.1
Non-classical monocyte nTPM: 546.8
Samples: 4
Max nTPM: 769.8
Min nTPM: 386.1
RHH5315_R3682
492.9
RHH5223_R3595
386.1
RHH5252_R3624
538.6
RHH5281_R3653
769.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
458.9
Schmiedel sample id
TPM
Classical monocyte TPM: 459.0
Samples: 91
Max TPM: 560.7
Min TPM: 376.4
MONOCYTES_1
560.7
MONOCYTES_2
535.9
MONOCYTES_3
529.1
MONOCYTES_4
524.2
MONOCYTES_5
522.8
MONOCYTES_6
522.4
MONOCYTES_7
512.3
MONOCYTES_8
510.8
MONOCYTES_9
506.9
MONOCYTES_10
506.6
MONOCYTES_11
505.4
MONOCYTES_12
504.1
MONOCYTES_13
498.9
MONOCYTES_14
498.6
MONOCYTES_15
497.5
MONOCYTES_16
497.1
MONOCYTES_17
495.9
MONOCYTES_18
492.4
MONOCYTES_19
491.0
MONOCYTES_20
490.2
MONOCYTES_21
487.2
MONOCYTES_22
486.6
MONOCYTES_23
483.6
MONOCYTES_24
483.5
MONOCYTES_25
483.5
MONOCYTES_26
481.6
MONOCYTES_27
479.5
MONOCYTES_28
476.3
MONOCYTES_29
475.8
MONOCYTES_30
475.5
MONOCYTES_31
475.1
MONOCYTES_32
473.7
MONOCYTES_33
472.2
MONOCYTES_34
471.7
MONOCYTES_35
471.0
MONOCYTES_36
470.9
MONOCYTES_37
470.1
MONOCYTES_38
470.0
MONOCYTES_39
468.8
MONOCYTES_40
468.4
MONOCYTES_41
467.5
MONOCYTES_42
466.9
MONOCYTES_43
463.5
MONOCYTES_44
462.3
MONOCYTES_45
461.5
MONOCYTES_46
456.8
MONOCYTES_47
455.4
MONOCYTES_48
454.6
MONOCYTES_49
454.0
MONOCYTES_50
453.2
MONOCYTES_51
451.3
MONOCYTES_52
450.6
MONOCYTES_53
447.3
MONOCYTES_54
447.3
MONOCYTES_55
446.5
MONOCYTES_56
446.3
MONOCYTES_57
445.1
MONOCYTES_58
442.6
MONOCYTES_59
441.0
MONOCYTES_60
441.0
MONOCYTES_61
440.9
MONOCYTES_62
437.8
MONOCYTES_63
436.9
MONOCYTES_64
436.6
MONOCYTES_65
433.3
MONOCYTES_66
431.6
MONOCYTES_67
431.2
MONOCYTES_68
430.3
MONOCYTES_69
429.9
MONOCYTES_70
428.9
MONOCYTES_71
427.1
MONOCYTES_72
426.8
MONOCYTES_73
426.0
MONOCYTES_74
425.1
MONOCYTES_75
424.5
MONOCYTES_76
424.5
MONOCYTES_77
424.5
MONOCYTES_78
420.6
MONOCYTES_79
419.9
MONOCYTES_80
419.2
MONOCYTES_81
416.3
MONOCYTES_82
413.9
MONOCYTES_83
412.2
MONOCYTES_84
409.1
MONOCYTES_85
407.1
MONOCYTES_86
403.8
MONOCYTES_87
402.3
MONOCYTES_88
393.4
MONOCYTES_89
391.3
MONOCYTES_90
381.3
MONOCYTES_91
376.4
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Non-classical monocyte TPM: 404.5
Samples: 90
Max TPM: 536.9
Min TPM: 293.5
M2_1
536.9
M2_2
509.0
M2_3
489.5
M2_4
488.3
M2_5
484.0
M2_6
481.8
M2_7
481.8
M2_8
480.5
M2_9
471.0
M2_10
468.7
M2_11
464.4
M2_12
457.0
M2_13
455.4
M2_14
454.4
M2_15
452.8
M2_16
448.8
M2_17
448.5
M2_18
448.4
M2_19
446.1
M2_20
441.9
M2_21
441.9
M2_22
440.5
M2_23
436.1
M2_24
435.8
M2_25
434.4
M2_26
433.5
M2_27
432.3
M2_28
424.2
M2_29
421.3
M2_30
419.9
M2_31
419.8
M2_32
418.1
M2_33
414.5
M2_34
413.2
M2_35
413.1
M2_36
412.6
M2_37
411.1
M2_38
410.8
M2_39
410.7
M2_40
407.7
M2_41
406.3
M2_42
405.3
M2_43
404.8
M2_44
404.7
M2_45
400.8
M2_46
400.3
M2_47
396.6
M2_48
395.0
M2_49
394.0
M2_50
393.6
M2_51
389.5
M2_52
388.4
M2_53
387.9
M2_54
387.8
M2_55
385.0
M2_56
384.6
M2_57
382.6
M2_58
382.2
M2_59
380.9
M2_60
380.7
M2_61
379.3
M2_62
377.9
M2_63
377.7
M2_64
377.4
M2_65
377.3
M2_66
376.8
M2_67
376.6
M2_68
372.7
M2_69
371.2
M2_70
369.5
M2_71
368.3
M2_72
366.4
M2_73
365.1
M2_74
364.8
M2_75
364.5
M2_76
361.4
M2_77
360.0
M2_78
359.4
M2_79
354.2
M2_80
353.6
M2_81
350.3
M2_82
344.9
M2_83
344.9
M2_84
343.7
M2_85
342.2
M2_86
342.1
M2_87
332.6
M2_88
331.9
M2_89
294.2
M2_90
293.5
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