A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.0
nTPM
Monaco:
202.3
nTPM
Schmiedel:
45.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.0
HPA sample
nTPM
Memory B-cell nTPM: 61.0
Samples: 6
Max nTPM: 82.9
Min nTPM: 46.6
P10809_1017
50.0
P10809_1025
82.9
P10809_1044
46.6
P10809_1063
53.5
P10809_1092
63.7
P10809_1105
69.3
Naive B-cell nTPM: 60.5
Samples: 6
Max nTPM: 106.9
Min nTPM: 41.0
P10809_1011
41.0
P10809_1029
52.0
P10809_1048
106.9
P10809_1067
49.0
P10809_1091
49.2
P10809_1104
64.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 164.9
Samples: 4
Max nTPM: 206.4
Min nTPM: 125.2
RHH5310_R3677
206.4
RHH5218_R3590
149.4
RHH5247_R3619
178.6
RHH5276_R3648
125.2
Naive B-cell nTPM: 192.1
Samples: 4
Max nTPM: 256.6
Min nTPM: 130.1
RHH5308_R3675
203.8
RHH5216_R3588
256.6
RHH5245_R3617
130.1
RHH5274_R3646
177.8
Non-switched memory B-cell nTPM: 190.1
Samples: 4
Max nTPM: 222.3
Min nTPM: 154.2
RHH5309_R3676
222.3
RHH5217_R3589
192.0
RHH5246_R3618
191.7
RHH5275_R3647
154.2
Plasmablast nTPM: 180.0
Samples: 4
Max nTPM: 201.5
Min nTPM: 162.4
RHH5312_R3679
189.1
RHH5220_R3592
201.5
RHH5249_R3621
167.0
RHH5278_R3650
162.4
Switched memory B-cell nTPM: 202.3
Samples: 4
Max nTPM: 256.2
Min nTPM: 161.3
RHH5311_R3678
256.2
RHH5219_R3591
214.8
RHH5248_R3620
177.0
RHH5277_R3649
161.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Schmiedel sample id
TPM
Naive B-cell TPM: 45.6
Samples: 91
Max TPM: 60.2
Min TPM: 30.5
B_CELL_NAIVE_1
60.2
B_CELL_NAIVE_2
59.1
B_CELL_NAIVE_3
58.1
B_CELL_NAIVE_4
55.1
B_CELL_NAIVE_5
54.7
B_CELL_NAIVE_6
53.9
B_CELL_NAIVE_7
53.8
B_CELL_NAIVE_8
52.9
B_CELL_NAIVE_9
52.7
B_CELL_NAIVE_10
52.1
B_CELL_NAIVE_11
51.6
B_CELL_NAIVE_12
51.3
B_CELL_NAIVE_13
51.3
B_CELL_NAIVE_14
51.3
B_CELL_NAIVE_15
51.3
B_CELL_NAIVE_16
51.2
B_CELL_NAIVE_17
50.9
B_CELL_NAIVE_18
50.8
B_CELL_NAIVE_19
50.7
B_CELL_NAIVE_20
50.7
B_CELL_NAIVE_21
50.5
B_CELL_NAIVE_22
49.9
B_CELL_NAIVE_23
49.8
B_CELL_NAIVE_24
49.7
B_CELL_NAIVE_25
49.0
B_CELL_NAIVE_26
48.9
B_CELL_NAIVE_27
48.7
B_CELL_NAIVE_28
48.5
B_CELL_NAIVE_29
48.2
B_CELL_NAIVE_30
48.1
B_CELL_NAIVE_31
47.9
B_CELL_NAIVE_32
47.8
B_CELL_NAIVE_33
47.8
B_CELL_NAIVE_34
47.7
B_CELL_NAIVE_35
47.4
B_CELL_NAIVE_36
47.1
B_CELL_NAIVE_37
47.0
B_CELL_NAIVE_38
46.4
B_CELL_NAIVE_39
46.3
B_CELL_NAIVE_40
46.2
B_CELL_NAIVE_41
46.0
B_CELL_NAIVE_42
45.9
B_CELL_NAIVE_43
45.9
B_CELL_NAIVE_44
45.8
B_CELL_NAIVE_45
45.8
B_CELL_NAIVE_46
45.7
B_CELL_NAIVE_47
45.7
B_CELL_NAIVE_48
45.6
B_CELL_NAIVE_49
45.5
B_CELL_NAIVE_50
45.1
B_CELL_NAIVE_51
44.6
B_CELL_NAIVE_52
44.5
B_CELL_NAIVE_53
44.4
B_CELL_NAIVE_54
44.3
B_CELL_NAIVE_55
44.3
B_CELL_NAIVE_56
44.2
B_CELL_NAIVE_57
43.8
B_CELL_NAIVE_58
43.7
B_CELL_NAIVE_59
43.7
B_CELL_NAIVE_60
43.5
B_CELL_NAIVE_61
43.4
B_CELL_NAIVE_62
43.3
B_CELL_NAIVE_63
43.3
B_CELL_NAIVE_64
43.1
B_CELL_NAIVE_65
43.0
B_CELL_NAIVE_66
43.0
B_CELL_NAIVE_67
42.9
B_CELL_NAIVE_68
42.5
B_CELL_NAIVE_69
42.0
B_CELL_NAIVE_70
41.6
B_CELL_NAIVE_71
41.5
B_CELL_NAIVE_72
41.5
B_CELL_NAIVE_73
41.3
B_CELL_NAIVE_74
41.0
B_CELL_NAIVE_75
40.9
B_CELL_NAIVE_76
40.7
B_CELL_NAIVE_77
40.4
B_CELL_NAIVE_78
40.0
B_CELL_NAIVE_79
39.9
B_CELL_NAIVE_80
39.8
B_CELL_NAIVE_81
39.4
B_CELL_NAIVE_82
38.3
B_CELL_NAIVE_83
37.8
B_CELL_NAIVE_84
37.4
B_CELL_NAIVE_85
36.1
B_CELL_NAIVE_86
36.1
B_CELL_NAIVE_87
34.8
B_CELL_NAIVE_88
34.7
B_CELL_NAIVE_89
32.4
B_CELL_NAIVE_90
31.9
B_CELL_NAIVE_91
30.5
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The Human Protein Atlas project is funded
