A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.5
nTPM
Monaco:
206.7
nTPM
Schmiedel:
59.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.5
HPA sample
nTPM
NK-cell nTPM: 68.5
Samples: 6
Max nTPM: 122.4
Min nTPM: 31.4
P10809_1013
31.4
P10809_1033
66.8
P10809_1052
42.0
P10809_1071
74.8
P10809_1093
122.4
P10809_1103
73.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
206.7
Monaco sample
nTPM
NK-cell nTPM: 206.7
Samples: 4
Max nTPM: 268.0
Min nTPM: 157.6
RHH5316_R3683
218.6
RHH5224_R3596
268.0
RHH5253_R3625
157.6
RHH5282_R3654
182.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.5
Schmiedel sample id
TPM
NK-cell TPM: 59.5
Samples: 90
Max TPM: 74.1
Min TPM: 46.8
NK_1
74.1
NK_2
73.4
NK_3
72.6
NK_4
71.5
NK_5
71.3
NK_6
71.2
NK_7
70.2
NK_8
69.9
NK_9
69.5
NK_10
68.2
NK_11
67.7
NK_12
67.6
NK_13
67.4
NK_14
67.3
NK_15
67.0
NK_16
66.5
NK_17
66.5
NK_18
66.3
NK_19
65.7
NK_20
64.2
NK_21
64.1
NK_22
64.0
NK_23
63.9
NK_24
63.7
NK_25
63.6
NK_26
63.6
NK_27
63.4
NK_28
63.4
NK_29
63.1
NK_30
62.8
NK_31
62.7
NK_32
62.6
NK_33
62.5
NK_34
62.3
NK_35
62.1
NK_36
61.8
NK_37
61.4
NK_38
61.2
NK_39
61.1
NK_40
61.0
NK_41
60.8
NK_42
60.6
NK_43
60.4
NK_44
60.3
NK_45
60.1
NK_46
60.0
NK_47
60.0
NK_48
59.6
NK_49
58.3
NK_50
57.8
NK_51
57.7
NK_52
56.9
NK_53
56.9
NK_54
56.3
NK_55
56.2
NK_56
56.2
NK_57
56.1
NK_58
56.1
NK_59
55.5
NK_60
55.2
NK_61
54.9
NK_62
54.9
NK_63
54.8
NK_64
54.5
NK_65
54.5
NK_66
54.3
NK_67
54.3
NK_68
54.3
NK_69
54.2
NK_70
54.2
NK_71
54.1
NK_72
54.0
NK_73
53.9
NK_74
53.2
NK_75
53.0
NK_76
52.1
NK_77
51.4
NK_78
51.4
NK_79
51.3
NK_80
51.0
NK_81
50.2
NK_82
50.1
NK_83
49.9
NK_84
49.6
NK_85
48.6
NK_86
48.4
NK_87
48.1
NK_88
47.7
NK_89
47.5
NK_90
46.8
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