A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
65.5
nTPM
Monaco:
166.0
nTPM
Schmiedel:
34.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.5
HPA sample
nTPM
Classical monocyte nTPM: 50.5
Samples: 6
Max nTPM: 61.1
Min nTPM: 36.2
P10809_1003
36.2
P10809_1020
58.9
P10809_1039
61.1
P10809_1058
40.9
P10809_1080
57.1
P10809_1107
48.7
Intermediate monocyte nTPM: 50.8
Samples: 6
Max nTPM: 59.7
Min nTPM: 41.4
P10809_1004
43.8
P10809_1023
59.7
P10809_1042
52.6
P10809_1061
57.2
P10809_1081
41.4
P10809_1108
50.0
Non-classical monocyte nTPM: 65.5
Samples: 5
Max nTPM: 140.9
Min nTPM: 40.5
P10809_1005
48.0
P10809_1053
53.0
P10809_1072
140.9
P10809_1082
40.5
P10809_1109
45.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.0
Monaco sample
nTPM
Classical monocyte nTPM: 146.5
Samples: 4
Max nTPM: 160.6
Min nTPM: 132.3
RHH5313_R3680
153.4
RHH5221_R3593
139.6
RHH5250_R3622
132.3
RHH5279_R3651
160.6
Intermediate monocyte nTPM: 129.0
Samples: 4
Max nTPM: 159.4
Min nTPM: 98.1
RHH5314_R3681
159.4
RHH5222_R3594
98.1
RHH5251_R3623
127.2
RHH5280_R3652
131.3
Non-classical monocyte nTPM: 166.0
Samples: 4
Max nTPM: 199.1
Min nTPM: 131.0
RHH5315_R3682
177.0
RHH5223_R3595
131.0
RHH5252_R3624
156.7
RHH5281_R3653
199.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
Schmiedel sample id
TPM
Classical monocyte TPM: 28.6
Samples: 91
Max TPM: 39.9
Min TPM: 17.5
MONOCYTES_1
39.9
MONOCYTES_2
37.2
MONOCYTES_3
35.9
MONOCYTES_4
35.7
MONOCYTES_5
35.2
MONOCYTES_6
34.8
MONOCYTES_7
34.6
MONOCYTES_8
34.5
MONOCYTES_9
34.1
MONOCYTES_10
34.1
MONOCYTES_11
33.7
MONOCYTES_12
33.3
MONOCYTES_13
33.2
MONOCYTES_14
32.8
MONOCYTES_15
32.7
MONOCYTES_16
32.7
MONOCYTES_17
32.6
MONOCYTES_18
32.2
MONOCYTES_19
32.2
MONOCYTES_20
32.0
MONOCYTES_21
31.9
MONOCYTES_22
31.4
MONOCYTES_23
31.3
MONOCYTES_24
31.1
MONOCYTES_25
31.1
MONOCYTES_26
31.0
MONOCYTES_27
30.9
MONOCYTES_28
30.8
MONOCYTES_29
30.8
MONOCYTES_30
30.0
MONOCYTES_31
30.0
MONOCYTES_32
29.7
MONOCYTES_33
29.6
MONOCYTES_34
29.2
MONOCYTES_35
29.2
MONOCYTES_36
29.0
MONOCYTES_37
29.0
MONOCYTES_38
28.8
MONOCYTES_39
28.7
MONOCYTES_40
28.5
MONOCYTES_41
28.4
MONOCYTES_42
28.4
MONOCYTES_43
28.4
MONOCYTES_44
28.0
MONOCYTES_45
28.0
MONOCYTES_46
28.0
MONOCYTES_47
27.8
MONOCYTES_48
27.7
MONOCYTES_49
27.6
MONOCYTES_50
27.6
MONOCYTES_51
27.6
MONOCYTES_52
27.6
MONOCYTES_53
27.5
MONOCYTES_54
27.5
MONOCYTES_55
27.3
MONOCYTES_56
27.2
MONOCYTES_57
27.0
MONOCYTES_58
27.0
MONOCYTES_59
26.9
MONOCYTES_60
26.9
MONOCYTES_61
26.8
MONOCYTES_62
26.8
MONOCYTES_63
26.6
MONOCYTES_64
26.6
MONOCYTES_65
26.5
MONOCYTES_66
26.4
MONOCYTES_67
26.3
MONOCYTES_68
26.2
MONOCYTES_69
26.1
MONOCYTES_70
26.1
MONOCYTES_71
26.1
MONOCYTES_72
26.0
MONOCYTES_73
26.0
MONOCYTES_74
26.0
MONOCYTES_75
26.0
MONOCYTES_76
25.8
MONOCYTES_77
25.3
MONOCYTES_78
25.3
MONOCYTES_79
25.1
MONOCYTES_80
24.5
MONOCYTES_81
24.2
MONOCYTES_82
24.0
MONOCYTES_83
23.9
MONOCYTES_84
23.1
MONOCYTES_85
22.8
MONOCYTES_86
22.5
MONOCYTES_87
22.5
MONOCYTES_88
21.9
MONOCYTES_89
21.5
MONOCYTES_90
20.5
MONOCYTES_91
17.5
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Non-classical monocyte TPM: 34.2
Samples: 90
Max TPM: 45.9
Min TPM: 22.4
M2_1
45.9
M2_2
43.8
M2_3
43.5
M2_4
43.0
M2_5
42.9
M2_6
42.9
M2_7
40.7
M2_8
39.6
M2_9
39.5
M2_10
39.5
M2_11
39.3
M2_12
39.2
M2_13
38.7
M2_14
38.6
M2_15
38.5
M2_16
38.0
M2_17
38.0
M2_18
38.0
M2_19
37.8
M2_20
37.8
M2_21
37.6
M2_22
37.6
M2_23
37.5
M2_24
37.5
M2_25
37.4
M2_26
36.9
M2_27
36.7
M2_28
36.5
M2_29
35.9
M2_30
35.2
M2_31
35.2
M2_32
35.2
M2_33
35.1
M2_34
35.1
M2_35
35.0
M2_36
34.9
M2_37
34.7
M2_38
34.6
M2_39
34.5
M2_40
34.2
M2_41
34.2
M2_42
34.0
M2_43
34.0
M2_44
33.9
M2_45
33.8
M2_46
33.8
M2_47
33.8
M2_48
33.7
M2_49
33.6
M2_50
33.5
M2_51
33.4
M2_52
33.2
M2_53
33.2
M2_54
33.2
M2_55
32.9
M2_56
32.9
M2_57
32.9
M2_58
32.7
M2_59
32.6
M2_60
32.6
M2_61
32.5
M2_62
32.4
M2_63
32.4
M2_64
31.7
M2_65
31.5
M2_66
31.2
M2_67
31.2
M2_68
31.2
M2_69
31.0
M2_70
30.9
M2_71
30.9
M2_72
30.8
M2_73
30.6
M2_74
30.0
M2_75
30.0
M2_76
29.8
M2_77
29.8
M2_78
29.4
M2_79
29.3
M2_80
29.2
M2_81
29.1
M2_82
29.0
M2_83
28.8
M2_84
28.3
M2_85
27.7
M2_86
27.6
M2_87
27.1
M2_88
26.0
M2_89
23.6
M2_90
22.4
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