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BETA
  • SUMMARY

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  • BRAIN

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  • RASGRP2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:171.6 nTPM
Monaco:213.9 nTPM
Schmiedel:255.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

171.6
HPA sample nTPM
Memory B-cell
nTPM: 171.6
Samples: 6

Max nTPM: 517.2
Min nTPM: 84.1
P10809_1017 84.1
P10809_1025 112.5
P10809_1044 517.2
P10809_1063 105.5
P10809_1092 91.6
P10809_1105 118.6
Naive B-cell
nTPM: 100.7
Samples: 6

Max nTPM: 198.8
Min nTPM: 56.4
P10809_1011 56.4
P10809_1029 104.6
P10809_1048 198.8
P10809_1067 65.0
P10809_1091 88.0
P10809_1104 91.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

213.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 187.8
Samples: 4

Max nTPM: 250.7
Min nTPM: 144.8
RHH5310_R3677 166.1
RHH5218_R3590 144.8
RHH5247_R3619 189.5
RHH5276_R3648 250.7
Naive B-cell
nTPM: 167.7
Samples: 4

Max nTPM: 204.6
Min nTPM: 145.1
RHH5308_R3675 159.3
RHH5216_R3588 145.1
RHH5245_R3617 204.6
RHH5274_R3646 161.9
Non-switched memory B-cell
nTPM: 189.4
Samples: 4

Max nTPM: 225.1
Min nTPM: 171.1
RHH5309_R3676 171.1
RHH5217_R3589 173.9
RHH5246_R3618 187.6
RHH5275_R3647 225.1
Plasmablast
nTPM: 116.2
Samples: 4

Max nTPM: 132.0
Min nTPM: 104.8
RHH5312_R3679 104.8
RHH5220_R3592 116.3
RHH5249_R3621 111.7
RHH5278_R3650 132.0
Switched memory B-cell
nTPM: 214.0
Samples: 4

Max nTPM: 264.8
Min nTPM: 154.3
RHH5311_R3678 154.3
RHH5219_R3591 248.4
RHH5248_R3620 188.3
RHH5277_R3649 264.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

255.1
Schmiedel sample id TPM
Naive B-cell
TPM: 255.1
Samples: 91

Max TPM: 430.3
Min TPM: 59.0
B_CELL_NAIVE_1 430.3
B_CELL_NAIVE_2 397.2
B_CELL_NAIVE_3 395.8
B_CELL_NAIVE_4 383.2
B_CELL_NAIVE_5 376.9
B_CELL_NAIVE_6 370.3
B_CELL_NAIVE_7 368.8
B_CELL_NAIVE_8 367.0
B_CELL_NAIVE_9 365.5
B_CELL_NAIVE_10 364.8
B_CELL_NAIVE_11 360.9
B_CELL_NAIVE_12 359.1
B_CELL_NAIVE_13 353.4
B_CELL_NAIVE_14 353.4
B_CELL_NAIVE_15 349.4
B_CELL_NAIVE_16 348.4
B_CELL_NAIVE_17 347.0
B_CELL_NAIVE_18 346.6
B_CELL_NAIVE_19 345.9
B_CELL_NAIVE_20 341.7
B_CELL_NAIVE_21 338.4
B_CELL_NAIVE_22 338.3
B_CELL_NAIVE_23 335.9
B_CELL_NAIVE_24 334.2
B_CELL_NAIVE_25 326.2
B_CELL_NAIVE_26 324.2
B_CELL_NAIVE_27 321.8
B_CELL_NAIVE_28 320.7
B_CELL_NAIVE_29 318.6
B_CELL_NAIVE_30 316.3
B_CELL_NAIVE_31 306.8
B_CELL_NAIVE_32 297.8
B_CELL_NAIVE_33 297.1
B_CELL_NAIVE_34 296.2
B_CELL_NAIVE_35 293.0
B_CELL_NAIVE_36 289.6
B_CELL_NAIVE_37 288.7
B_CELL_NAIVE_38 285.4
B_CELL_NAIVE_39 280.9
B_CELL_NAIVE_40 280.2
B_CELL_NAIVE_41 280.1
B_CELL_NAIVE_42 274.2
B_CELL_NAIVE_43 273.6
B_CELL_NAIVE_44 270.7
B_CELL_NAIVE_45 266.8
B_CELL_NAIVE_46 264.8
B_CELL_NAIVE_47 258.6
B_CELL_NAIVE_48 258.1
B_CELL_NAIVE_49 251.3
B_CELL_NAIVE_50 250.5
B_CELL_NAIVE_51 250.1
B_CELL_NAIVE_52 244.8
B_CELL_NAIVE_53 241.2
B_CELL_NAIVE_54 240.5
B_CELL_NAIVE_55 235.5
B_CELL_NAIVE_56 234.5
B_CELL_NAIVE_57 233.5
B_CELL_NAIVE_58 227.2
B_CELL_NAIVE_59 224.9
B_CELL_NAIVE_60 224.7
B_CELL_NAIVE_61 216.1
B_CELL_NAIVE_62 209.1
B_CELL_NAIVE_63 205.9
B_CELL_NAIVE_64 202.5
B_CELL_NAIVE_65 201.3
B_CELL_NAIVE_66 201.3
B_CELL_NAIVE_67 201.0
B_CELL_NAIVE_68 200.6
B_CELL_NAIVE_69 194.5
B_CELL_NAIVE_70 191.0
B_CELL_NAIVE_71 188.7
B_CELL_NAIVE_72 184.2
B_CELL_NAIVE_73 177.9
B_CELL_NAIVE_74 174.9
B_CELL_NAIVE_75 173.7
B_CELL_NAIVE_76 159.3
B_CELL_NAIVE_77 154.5
B_CELL_NAIVE_78 153.9
B_CELL_NAIVE_79 144.9
B_CELL_NAIVE_80 139.4
B_CELL_NAIVE_81 138.1
B_CELL_NAIVE_82 132.3
B_CELL_NAIVE_83 115.3
B_CELL_NAIVE_84 105.5
B_CELL_NAIVE_85 104.4
B_CELL_NAIVE_86 85.8
B_CELL_NAIVE_87 85.1
B_CELL_NAIVE_88 66.0
B_CELL_NAIVE_89 65.9
B_CELL_NAIVE_90 61.5
B_CELL_NAIVE_91 59.0
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