A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
171.6
nTPM
Monaco:
213.9
nTPM
Schmiedel:
255.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.6
HPA sample
nTPM
Memory B-cell nTPM: 171.6
Samples: 6
Max nTPM: 517.2
Min nTPM: 84.1
P10809_1017
84.1
P10809_1025
112.5
P10809_1044
517.2
P10809_1063
105.5
P10809_1092
91.6
P10809_1105
118.6
Naive B-cell nTPM: 100.7
Samples: 6
Max nTPM: 198.8
Min nTPM: 56.4
P10809_1011
56.4
P10809_1029
104.6
P10809_1048
198.8
P10809_1067
65.0
P10809_1091
88.0
P10809_1104
91.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
213.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 187.8
Samples: 4
Max nTPM: 250.7
Min nTPM: 144.8
RHH5310_R3677
166.1
RHH5218_R3590
144.8
RHH5247_R3619
189.5
RHH5276_R3648
250.7
Naive B-cell nTPM: 167.7
Samples: 4
Max nTPM: 204.6
Min nTPM: 145.1
RHH5308_R3675
159.3
RHH5216_R3588
145.1
RHH5245_R3617
204.6
RHH5274_R3646
161.9
Non-switched memory B-cell nTPM: 189.4
Samples: 4
Max nTPM: 225.1
Min nTPM: 171.1
RHH5309_R3676
171.1
RHH5217_R3589
173.9
RHH5246_R3618
187.6
RHH5275_R3647
225.1
Plasmablast nTPM: 116.2
Samples: 4
Max nTPM: 132.0
Min nTPM: 104.8
RHH5312_R3679
104.8
RHH5220_R3592
116.3
RHH5249_R3621
111.7
RHH5278_R3650
132.0
Switched memory B-cell nTPM: 214.0
Samples: 4
Max nTPM: 264.8
Min nTPM: 154.3
RHH5311_R3678
154.3
RHH5219_R3591
248.4
RHH5248_R3620
188.3
RHH5277_R3649
264.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
255.1
Schmiedel sample id
TPM
Naive B-cell TPM: 255.1
Samples: 91
Max TPM: 430.3
Min TPM: 59.0
B_CELL_NAIVE_1
430.3
B_CELL_NAIVE_2
397.2
B_CELL_NAIVE_3
395.8
B_CELL_NAIVE_4
383.2
B_CELL_NAIVE_5
376.9
B_CELL_NAIVE_6
370.3
B_CELL_NAIVE_7
368.8
B_CELL_NAIVE_8
367.0
B_CELL_NAIVE_9
365.5
B_CELL_NAIVE_10
364.8
B_CELL_NAIVE_11
360.9
B_CELL_NAIVE_12
359.1
B_CELL_NAIVE_13
353.4
B_CELL_NAIVE_14
353.4
B_CELL_NAIVE_15
349.4
B_CELL_NAIVE_16
348.4
B_CELL_NAIVE_17
347.0
B_CELL_NAIVE_18
346.6
B_CELL_NAIVE_19
345.9
B_CELL_NAIVE_20
341.7
B_CELL_NAIVE_21
338.4
B_CELL_NAIVE_22
338.3
B_CELL_NAIVE_23
335.9
B_CELL_NAIVE_24
334.2
B_CELL_NAIVE_25
326.2
B_CELL_NAIVE_26
324.2
B_CELL_NAIVE_27
321.8
B_CELL_NAIVE_28
320.7
B_CELL_NAIVE_29
318.6
B_CELL_NAIVE_30
316.3
B_CELL_NAIVE_31
306.8
B_CELL_NAIVE_32
297.8
B_CELL_NAIVE_33
297.1
B_CELL_NAIVE_34
296.2
B_CELL_NAIVE_35
293.0
B_CELL_NAIVE_36
289.6
B_CELL_NAIVE_37
288.7
B_CELL_NAIVE_38
285.4
B_CELL_NAIVE_39
280.9
B_CELL_NAIVE_40
280.2
B_CELL_NAIVE_41
280.1
B_CELL_NAIVE_42
274.2
B_CELL_NAIVE_43
273.6
B_CELL_NAIVE_44
270.7
B_CELL_NAIVE_45
266.8
B_CELL_NAIVE_46
264.8
B_CELL_NAIVE_47
258.6
B_CELL_NAIVE_48
258.1
B_CELL_NAIVE_49
251.3
B_CELL_NAIVE_50
250.5
B_CELL_NAIVE_51
250.1
B_CELL_NAIVE_52
244.8
B_CELL_NAIVE_53
241.2
B_CELL_NAIVE_54
240.5
B_CELL_NAIVE_55
235.5
B_CELL_NAIVE_56
234.5
B_CELL_NAIVE_57
233.5
B_CELL_NAIVE_58
227.2
B_CELL_NAIVE_59
224.9
B_CELL_NAIVE_60
224.7
B_CELL_NAIVE_61
216.1
B_CELL_NAIVE_62
209.1
B_CELL_NAIVE_63
205.9
B_CELL_NAIVE_64
202.5
B_CELL_NAIVE_65
201.3
B_CELL_NAIVE_66
201.3
B_CELL_NAIVE_67
201.0
B_CELL_NAIVE_68
200.6
B_CELL_NAIVE_69
194.5
B_CELL_NAIVE_70
191.0
B_CELL_NAIVE_71
188.7
B_CELL_NAIVE_72
184.2
B_CELL_NAIVE_73
177.9
B_CELL_NAIVE_74
174.9
B_CELL_NAIVE_75
173.7
B_CELL_NAIVE_76
159.3
B_CELL_NAIVE_77
154.5
B_CELL_NAIVE_78
153.9
B_CELL_NAIVE_79
144.9
B_CELL_NAIVE_80
139.4
B_CELL_NAIVE_81
138.1
B_CELL_NAIVE_82
132.3
B_CELL_NAIVE_83
115.3
B_CELL_NAIVE_84
105.5
B_CELL_NAIVE_85
104.4
B_CELL_NAIVE_86
85.8
B_CELL_NAIVE_87
85.1
B_CELL_NAIVE_88
66.0
B_CELL_NAIVE_89
65.9
B_CELL_NAIVE_90
61.5
B_CELL_NAIVE_91
59.0
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