A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.5
nTPM
Monaco:
127.7
nTPM
Schmiedel:
203.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.5
HPA sample
nTPM
NK-cell nTPM: 55.5
Samples: 6
Max nTPM: 77.4
Min nTPM: 27.5
P10809_1013
27.5
P10809_1033
66.8
P10809_1052
47.1
P10809_1071
61.3
P10809_1093
52.8
P10809_1103
77.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.7
Monaco sample
nTPM
NK-cell nTPM: 127.8
Samples: 4
Max nTPM: 139.7
Min nTPM: 116.1
RHH5316_R3683
136.1
RHH5224_R3596
116.1
RHH5253_R3625
139.7
RHH5282_R3654
119.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
203.4
Schmiedel sample id
TPM
NK-cell TPM: 203.4
Samples: 90
Max TPM: 352.4
Min TPM: 52.9
NK_1
352.4
NK_2
340.6
NK_3
334.7
NK_4
314.2
NK_5
313.8
NK_6
313.0
NK_7
306.8
NK_8
301.1
NK_9
300.0
NK_10
295.3
NK_11
291.5
NK_12
290.6
NK_13
287.4
NK_14
270.2
NK_15
269.7
NK_16
263.3
NK_17
262.4
NK_18
255.8
NK_19
255.1
NK_20
252.5
NK_21
251.6
NK_22
251.0
NK_23
250.6
NK_24
247.3
NK_25
242.5
NK_26
241.3
NK_27
239.6
NK_28
239.0
NK_29
236.5
NK_30
236.1
NK_31
235.0
NK_32
234.9
NK_33
233.4
NK_34
233.0
NK_35
230.9
NK_36
229.1
NK_37
227.5
NK_38
225.6
NK_39
225.2
NK_40
222.8
NK_41
221.4
NK_42
216.0
NK_43
214.5
NK_44
213.4
NK_45
213.1
NK_46
207.6
NK_47
204.9
NK_48
197.8
NK_49
197.1
NK_50
196.0
NK_51
194.6
NK_52
194.5
NK_53
193.2
NK_54
191.0
NK_55
190.7
NK_56
189.7
NK_57
187.6
NK_58
185.8
NK_59
185.5
NK_60
175.2
NK_61
171.8
NK_62
168.3
NK_63
166.8
NK_64
162.9
NK_65
160.0
NK_66
151.4
NK_67
150.6
NK_68
150.5
NK_69
150.4
NK_70
144.9
NK_71
144.6
NK_72
138.7
NK_73
135.6
NK_74
134.1
NK_75
134.0
NK_76
133.0
NK_77
124.4
NK_78
121.3
NK_79
118.9
NK_80
115.5
NK_81
112.0
NK_82
110.3
NK_83
108.7
NK_84
94.5
NK_85
89.3
NK_86
77.5
NK_87
75.3
NK_88
68.9
NK_89
64.1
NK_90
52.9
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