A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
106.4
nTPM
Monaco:
199.1
nTPM
Schmiedel:
137.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.4
HPA sample
nTPM
Classical monocyte nTPM: 34.2
Samples: 6
Max nTPM: 41.4
Min nTPM: 24.8
P10809_1003
24.8
P10809_1020
36.0
P10809_1039
39.5
P10809_1058
29.1
P10809_1080
34.3
P10809_1107
41.4
Intermediate monocyte nTPM: 88.2
Samples: 6
Max nTPM: 138.6
Min nTPM: 49.2
P10809_1004
88.2
P10809_1023
84.9
P10809_1042
101.9
P10809_1061
49.2
P10809_1081
66.3
P10809_1108
138.6
Non-classical monocyte nTPM: 106.4
Samples: 5
Max nTPM: 121.8
Min nTPM: 96.3
P10809_1005
110.3
P10809_1053
102.5
P10809_1072
101.0
P10809_1082
96.3
P10809_1109
121.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.1
Monaco sample
nTPM
Classical monocyte nTPM: 74.7
Samples: 4
Max nTPM: 81.1
Min nTPM: 69.2
RHH5313_R3680
69.2
RHH5221_R3593
75.6
RHH5250_R3622
72.8
RHH5279_R3651
81.1
Intermediate monocyte nTPM: 197.7
Samples: 4
Max nTPM: 219.6
Min nTPM: 175.9
RHH5314_R3681
175.9
RHH5222_R3594
219.6
RHH5251_R3623
199.8
RHH5280_R3652
195.6
Non-classical monocyte nTPM: 199.1
Samples: 4
Max nTPM: 206.1
Min nTPM: 192.2
RHH5315_R3682
206.1
RHH5223_R3595
194.4
RHH5252_R3624
203.9
RHH5281_R3653
192.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.7
Schmiedel sample id
TPM
Classical monocyte TPM: 53.6
Samples: 91
Max TPM: 86.7
Min TPM: 24.1
MONOCYTES_1
86.7
MONOCYTES_2
83.3
MONOCYTES_3
82.9
MONOCYTES_4
80.2
MONOCYTES_5
77.5
MONOCYTES_6
77.0
MONOCYTES_7
74.4
MONOCYTES_8
74.3
MONOCYTES_9
73.4
MONOCYTES_10
72.6
MONOCYTES_11
72.2
MONOCYTES_12
71.4
MONOCYTES_13
71.3
MONOCYTES_14
71.2
MONOCYTES_15
70.9
MONOCYTES_16
70.4
MONOCYTES_17
69.3
MONOCYTES_18
68.9
MONOCYTES_19
67.6
MONOCYTES_20
66.5
MONOCYTES_21
66.0
MONOCYTES_22
65.8
MONOCYTES_23
65.1
MONOCYTES_24
65.1
MONOCYTES_25
64.8
MONOCYTES_26
64.7
MONOCYTES_27
63.9
MONOCYTES_28
62.9
MONOCYTES_29
62.9
MONOCYTES_30
61.5
MONOCYTES_31
61.4
MONOCYTES_32
61.4
MONOCYTES_33
60.2
MONOCYTES_34
59.9
MONOCYTES_35
59.5
MONOCYTES_36
57.8
MONOCYTES_37
57.5
MONOCYTES_38
57.2
MONOCYTES_39
56.4
MONOCYTES_40
55.8
MONOCYTES_41
54.5
MONOCYTES_42
53.4
MONOCYTES_43
53.0
MONOCYTES_44
53.0
MONOCYTES_45
53.0
MONOCYTES_46
52.2
MONOCYTES_47
51.9
MONOCYTES_48
51.9
MONOCYTES_49
51.2
MONOCYTES_50
50.4
MONOCYTES_51
50.3
MONOCYTES_52
50.2
MONOCYTES_53
49.8
MONOCYTES_54
48.5
MONOCYTES_55
48.5
MONOCYTES_56
48.4
MONOCYTES_57
47.4
MONOCYTES_58
47.3
MONOCYTES_59
46.3
MONOCYTES_60
46.3
MONOCYTES_61
46.1
MONOCYTES_62
45.6
MONOCYTES_63
45.4
MONOCYTES_64
44.8
MONOCYTES_65
44.5
MONOCYTES_66
44.4
MONOCYTES_67
44.3
MONOCYTES_68
43.7
MONOCYTES_69
43.6
MONOCYTES_70
43.2
MONOCYTES_71
42.8
MONOCYTES_72
41.4
MONOCYTES_73
40.8
MONOCYTES_74
39.9
MONOCYTES_75
39.9
MONOCYTES_76
39.9
MONOCYTES_77
38.8
MONOCYTES_78
37.6
MONOCYTES_79
34.9
MONOCYTES_80
34.6
MONOCYTES_81
32.3
MONOCYTES_82
30.7
MONOCYTES_83
30.0
MONOCYTES_84
29.5
MONOCYTES_85
29.3
MONOCYTES_86
29.3
MONOCYTES_87
29.3
MONOCYTES_88
28.9
MONOCYTES_89
28.6
MONOCYTES_90
28.6
MONOCYTES_91
24.1
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Non-classical monocyte TPM: 137.7
Samples: 90
Max TPM: 222.7
Min TPM: 48.0
M2_1
222.7
M2_2
221.0
M2_3
220.7
M2_4
215.3
M2_5
215.2
M2_6
211.3
M2_7
207.8
M2_8
204.7
M2_9
199.7
M2_10
199.2
M2_11
195.3
M2_12
193.6
M2_13
191.8
M2_14
190.1
M2_15
186.9
M2_16
185.6
M2_17
182.9
M2_18
181.2
M2_19
181.0
M2_20
179.4
M2_21
174.1
M2_22
174.0
M2_23
173.7
M2_24
172.3
M2_25
171.3
M2_26
165.4
M2_27
165.4
M2_28
164.9
M2_29
158.1
M2_30
157.9
M2_31
157.8
M2_32
157.0
M2_33
156.7
M2_34
151.1
M2_35
150.0
M2_36
149.8
M2_37
149.5
M2_38
148.9
M2_39
147.6
M2_40
147.0
M2_41
145.7
M2_42
143.0
M2_43
142.7
M2_44
142.5
M2_45
142.3
M2_46
141.8
M2_47
139.7
M2_48
139.4
M2_49
137.8
M2_50
137.0
M2_51
136.7
M2_52
134.8
M2_53
134.2
M2_54
132.6
M2_55
131.2
M2_56
130.2
M2_57
126.9
M2_58
126.7
M2_59
126.6
M2_60
117.5
M2_61
116.4
M2_62
116.2
M2_63
111.8
M2_64
109.5
M2_65
108.4
M2_66
104.8
M2_67
102.0
M2_68
98.3
M2_69
97.7
M2_70
96.7
M2_71
95.3
M2_72
94.7
M2_73
91.7
M2_74
90.6
M2_75
89.3
M2_76
78.2
M2_77
77.2
M2_78
76.5
M2_79
75.5
M2_80
75.0
M2_81
72.6
M2_82
69.1
M2_83
68.6
M2_84
62.7
M2_85
61.7
M2_86
58.5
M2_87
57.3
M2_88
51.0
M2_89
48.6
M2_90
48.0
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