We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
KCNAB2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • KCNAB2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:127.6 nTPM
HPA Brain:264.6 nTPM
GTEx:127.6 nTPM
FANTOM5:110.8 Scaled Tags Per Million
Pig:91.0 nTPM
Mouse:182.2 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.6
Sample id Sample description nTPM
Amygdala
nTPM: 137.4
2814 Male, age 76, right hemisphere 200.8
2517 Female, age 94, left hemisphere 185.0
1987 Female, age 91, left hemisphere 120.3
2514 Male, age 75, right hemisphere 118.2
2695 Female, age 67, right hemisphere 62.7
Basal amygdala
nTPM: 264.6
2685 Female, age 94, left hemisphere 342.1
2827 Female, age 67, right hemisphere 298.5
2243 Female, age 91, right hemisphere 293.5
2110 Male, age 80, left hemisphere 270.8
2609 Male, age 75, right hemisphere 198.4
1955 Male, age 76, both hemispheres 184.0
Central amygdala
nTPM: 176.8
2826 Female, age 94, left hemisphere 308.8
1905 Male, age 76, both hemispheres 178.4
2239 Male, age 80, left hemisphere 164.5
2701 Female, age 91, right hemisphere 122.1
2515 Male, age 75, right hemisphere 110.1
Corticomedial amygdala
nTPM: 234.5
2535 Female, age 67, right hemisphere 307.2
2829 Male, age 80, left hemisphere 280.1
2242 Female, age 91, right hemisphere 237.6
2429 Female, age 94, left hemisphere 232.1
2428 Male, age 75, right hemisphere 185.7
2240 Male, age 76, both hemispheres 164.4
Lateral amygdala
nTPM: 180.8
2534 Female, age 94, left hemisphere 321.8
1883 Male, age 76, both hemispheres 199.8
2256 Male, age 80, left hemisphere 176.5
2830 Female, age 67, right hemisphere 158.7
2255 Female, age 91, right hemisphere 139.3
2516 Male, age 75, right hemisphere 88.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.6
Samples: 181

Max nTPM: 362.2
Min nTPM: 16.0
Std nTPM: 65.5
Median nTPM: 122.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 362.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 287.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 281.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 276.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 271.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 264.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 248.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 244.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 244.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 244.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 243.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 232.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 228.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 228.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 220.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 218.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 214.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 213.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 212.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 212.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 211.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 211.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 210.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 210.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 206.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 203.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 203.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 202.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 202.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 198.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 198.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 192.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 192.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 188.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 185.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 185.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 178.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 175.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 173.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 172.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 172.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 172.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 171.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 170.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 170.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 169.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 168.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 168.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 166.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 164.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 162.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 162.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 162.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 162.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 159.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 158.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 155.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 151.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 150.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 150.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 149.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 143.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 139.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 138.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 137.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 135.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 134.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 133.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 132.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 132.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 130.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 129.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 127.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 126.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 125.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 123.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 122.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 120.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 120.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 119.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 119.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 118.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 118.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 115.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 114.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 113.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 113.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 110.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 110.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 108.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 104.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 104.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 100.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 99.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 89.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 88.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 85.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 84.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 84.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 82.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 76.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 74.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 73.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 70.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 70.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 69.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 66.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 65.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 65.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 63.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 60.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 60.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 58.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 58.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 58.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 52.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 46.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 44.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 42.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 42.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 41.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 33.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 27.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 26.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 26.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 25.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 25.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 24.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 16.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 110.8
FF:10151-102I7 76 years, female 110.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.0
Pig sample Sample description nTPM
Amygdala
nTPM: 91.0
Samples: 4

Max nTPM: 125.7
Min nTPM: 63.8
Sample A Female 125.7
Sample B Female 63.8
Sample C Male 94.6
Sample D Male 79.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 182.2
Samples: 4

Max nTPM: 235.0
Min nTPM: 155.9
Sample A Male 155.9
Sample B Male 176.2
Sample C Female 235.0
Sample D Female 161.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
1754 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 5.9
1755 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo