MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.3 nTPM
HPA Brain:106.5 nTPM
GTEx:40.3 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:130.5 nTPM
Mouse:135.5 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.9
2019 Male, age 18, unknown 136.7
2586 Male, age 75, left hemisphere 97.0
2219 Male, age 76, both hemispheres 91.4
2666 Male, age 74, left hemisphere 74.7
2411 Female, age 72, unknown 70.0
1827 Male, age 72, unknown 69.3
1833 Male, age 53, unknown 68.8
1830 Male, age 51, unknown 68.6
1870 Female, age 42, unknown 67.0
2828 Female, age 72, unknown 55.6
Dorsal raphe nucleus
nTPM: 77.0
1828 Male, age 53, unknown 105.3
2047 Male, age 72, unknown 91.9
2298 Female, age 72, unknown 74.1
2750 Male, age 76, both hemispheres 65.5
2016 Female, age 72, unknown 48.3
Inferior colliculus
nTPM: 91.6
1848 Female, age 42, unknown 102.9
2097 Female, age 72, unknown 99.7
2849 Male, age 72, unknown 82.3
1890 Male, age 53, unknown 81.3
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 100.1
2502 Female, age 75, unknown 147.7
1947 Male, age 18, unknown 80.2
1795 Male, age 51, unknown 72.4
Periaquaductal grey, dorsal
nTPM: 59.8
2464 Female, age 72, unknown 74.6
1840 Male, age 53, unknown 67.3
1831 Male, age 72, unknown 50.0
2850 Male, age 76, both hemispheres 47.4
Periaquaductal grey, lateral
nTPM: 50.2
2140 Male, age 76, both hemispheres 56.0
2053 Male, age 18, unknown 50.2
2272 Male, age 74, both hemispheres 44.5
Pretectal area
nTPM: 98.6
1944 Female, age 72, unknown 161.8
2007 Male, age 72, unknown 158.7
1816 Male, age 51, unknown 150.9
1817 Female, age 42, unknown 143.2
2667 Female, age 75, unknown 105.6
1815 Male, age 53, unknown 89.2
2407 Male, age 75, both hemispheres 60.7
2316 Male, age 76, right hemisphere 59.1
2224 Female, age 72, unknown 59.0
2825 Male, age 18, unknown 57.2
2273 Male, age 74, both hemispheres 39.1
Red nucleus
nTPM: 80.3
2785 Male, age 18, unknown 115.9
1821 Female, age 72, unknown 113.7
2769 Male, age 72, unknown 85.5
2584 Male, age 75, left hemisphere 82.2
2588 Male, age 74, left hemisphere 82.1
2823 Male, age 76, right hemisphere 80.3
2227 Male, age 72, unknown 80.1
1954 Female, age 42, unknown 74.1
1865 Male, age 51, unknown 69.1
2503 Female, age 72, unknown 66.1
2725 Female, age 75, unknown 57.8
1904 Male, age 53, unknown 56.7
Substantia nigra
nTPM: 106.5
1941 Male, age 53, unknown 184.9
2665 Male, age 74, both hemispheres 139.9
1889 Female, age 72, unknown 135.0
1851 Male, age 51, unknown 120.2
1916 Female, age 42, unknown 119.9
2241 Male, age 72, unknown 88.2
2409 Female, age 72, unknown 85.2
2699 Male, age 18, unknown 68.9
2583 Male, age 75, right hemisphere 62.1
2590 Female, age 75, unknown 60.6
Superior colliculus
nTPM: 91.4
1895 Male, age 76, right hemisphere 129.1
2087 Female, age 72, unknown 127.1
2664 Male, age 75, both hemispheres 112.7
2668 Female, age 75, unknown 105.5
2261 Male, age 18, unknown 88.9
1839 Male, age 51, unknown 86.0
1796 Male, age 53, unknown 80.2
2587 Male, age 74, left hemisphere 68.0
1913 Female, age 42, unknown 58.5
1995 Male, age 72, unknown 58.3
Ventral tegmental area
nTPM: 84.6
2223 Female, age 72, unknown 101.3
2218 Male, age 76, both hemispheres 100.0
2410 Female, age 72, unknown 95.5
1915 Female, age 42, unknown 90.6
1942 Male, age 51, unknown 68.7
2021 Male, age 53, unknown 51.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.3
Samples: 183

Max nTPM: 281.5
Min nTPM: 5.3
Std nTPM: 39.8
Median nTPM: 29.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 281.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 249.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 185.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 171.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 144.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 140.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 135.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 110.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 103.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.4
Samples: 4

Max nTPM: 74.5
Min nTPM: 30.2
Sample A Female 74.5
Sample B Female 31.3
Sample C Male 65.4
Sample D Male 30.2
Midbrain
nTPM: 86.0
Samples: 4

Max nTPM: 184.3
Min nTPM: 16.3
Sample A Female 16.3
Sample B Female 41.0
Sample C Male 184.3
Sample D Male 102.5
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 51.3
Min nTPM: 31.9
Sample B Female 39.8
Sample C Male 51.3
Sample D Male 31.9
Superior colliculi
nTPM: 130.5
Samples: 4

Max nTPM: 231.3
Min nTPM: 59.7
Sample A Female 108.8
Sample B Female 59.7
Sample C Male 231.3
Sample D Male 122.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 135.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.5
Samples: 4

Max nTPM: 139.2
Min nTPM: 129.4
Sample A Male 136.0
Sample B Male 129.4
Sample C Female 139.2
Sample D Female 137.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
1754 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 6.0
1755 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 1.7

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