A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.7
nTPM
Monaco:
57.3
nTPM
Schmiedel:
12.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
HPA sample
nTPM
Memory B-cell nTPM: 24.0
Samples: 6
Max nTPM: 30.5
Min nTPM: 11.9
P10809_1017
21.1
P10809_1025
25.5
P10809_1044
11.9
P10809_1063
25.3
P10809_1092
30.5
P10809_1105
29.8
Naive B-cell nTPM: 25.7
Samples: 6
Max nTPM: 47.0
Min nTPM: 13.8
P10809_1011
13.8
P10809_1029
21.0
P10809_1048
47.0
P10809_1067
21.2
P10809_1091
26.3
P10809_1104
24.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 31.5
Samples: 4
Max nTPM: 48.5
Min nTPM: 17.4
RHH5310_R3677
48.5
RHH5218_R3590
17.4
RHH5247_R3619
27.1
RHH5276_R3648
32.9
Naive B-cell nTPM: 28.8
Samples: 4
Max nTPM: 39.6
Min nTPM: 17.0
RHH5308_R3675
39.6
RHH5216_R3588
24.7
RHH5245_R3617
17.0
RHH5274_R3646
33.7
Non-switched memory B-cell nTPM: 43.2
Samples: 4
Max nTPM: 54.8
Min nTPM: 30.6
RHH5309_R3676
48.9
RHH5217_R3589
30.6
RHH5246_R3618
54.8
RHH5275_R3647
38.3
Plasmablast nTPM: 57.3
Samples: 4
Max nTPM: 77.6
Min nTPM: 32.3
RHH5312_R3679
32.3
RHH5220_R3592
77.6
RHH5249_R3621
70.7
RHH5278_R3650
48.8
Switched memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 61.4
Min nTPM: 32.9
RHH5311_R3678
32.9
RHH5219_R3591
61.4
RHH5248_R3620
34.7
RHH5277_R3649
56.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Schmiedel sample id
TPM
Naive B-cell TPM: 12.4
Samples: 91
Max TPM: 22.7
Min TPM: 2.4
B_CELL_NAIVE_1
22.7
B_CELL_NAIVE_2
22.6
B_CELL_NAIVE_3
22.2
B_CELL_NAIVE_4
22.2
B_CELL_NAIVE_5
22.2
B_CELL_NAIVE_6
22.1
B_CELL_NAIVE_7
21.7
B_CELL_NAIVE_8
21.3
B_CELL_NAIVE_9
21.1
B_CELL_NAIVE_10
20.9
B_CELL_NAIVE_11
20.9
B_CELL_NAIVE_12
20.6
B_CELL_NAIVE_13
20.4
B_CELL_NAIVE_14
19.7
B_CELL_NAIVE_15
19.6
B_CELL_NAIVE_16
19.6
B_CELL_NAIVE_17
19.4
B_CELL_NAIVE_18
19.3
B_CELL_NAIVE_19
18.8
B_CELL_NAIVE_20
18.3
B_CELL_NAIVE_21
18.1
B_CELL_NAIVE_22
17.7
B_CELL_NAIVE_23
17.2
B_CELL_NAIVE_24
16.9
B_CELL_NAIVE_25
16.7
B_CELL_NAIVE_26
15.7
B_CELL_NAIVE_27
15.6
B_CELL_NAIVE_28
15.6
B_CELL_NAIVE_29
15.5
B_CELL_NAIVE_30
15.5
B_CELL_NAIVE_31
15.4
B_CELL_NAIVE_32
14.8
B_CELL_NAIVE_33
14.5
B_CELL_NAIVE_34
14.3
B_CELL_NAIVE_35
13.9
B_CELL_NAIVE_36
13.6
B_CELL_NAIVE_37
13.0
B_CELL_NAIVE_38
13.0
B_CELL_NAIVE_39
13.0
B_CELL_NAIVE_40
12.7
B_CELL_NAIVE_41
12.7
B_CELL_NAIVE_42
12.3
B_CELL_NAIVE_43
12.3
B_CELL_NAIVE_44
12.1
B_CELL_NAIVE_45
12.0
B_CELL_NAIVE_46
11.7
B_CELL_NAIVE_47
11.4
B_CELL_NAIVE_48
11.4
B_CELL_NAIVE_49
11.3
B_CELL_NAIVE_50
11.2
B_CELL_NAIVE_51
11.0
B_CELL_NAIVE_52
10.9
B_CELL_NAIVE_53
10.8
B_CELL_NAIVE_54
10.7
B_CELL_NAIVE_55
10.6
B_CELL_NAIVE_56
10.2
B_CELL_NAIVE_57
10.0
B_CELL_NAIVE_58
9.9
B_CELL_NAIVE_59
9.8
B_CELL_NAIVE_60
9.7
B_CELL_NAIVE_61
9.4
B_CELL_NAIVE_62
9.1
B_CELL_NAIVE_63
9.1
B_CELL_NAIVE_64
8.9
B_CELL_NAIVE_65
8.7
B_CELL_NAIVE_66
8.5
B_CELL_NAIVE_67
8.4
B_CELL_NAIVE_68
8.3
B_CELL_NAIVE_69
8.3
B_CELL_NAIVE_70
7.9
B_CELL_NAIVE_71
7.7
B_CELL_NAIVE_72
7.6
B_CELL_NAIVE_73
6.6
B_CELL_NAIVE_74
6.2
B_CELL_NAIVE_75
5.8
B_CELL_NAIVE_76
5.8
B_CELL_NAIVE_77
5.7
B_CELL_NAIVE_78
5.4
B_CELL_NAIVE_79
5.4
B_CELL_NAIVE_80
5.3
B_CELL_NAIVE_81
5.1
B_CELL_NAIVE_82
4.5
B_CELL_NAIVE_83
4.3
B_CELL_NAIVE_84
4.0
B_CELL_NAIVE_85
3.3
B_CELL_NAIVE_86
3.3
B_CELL_NAIVE_87
2.9
B_CELL_NAIVE_88
2.7
B_CELL_NAIVE_89
2.6
B_CELL_NAIVE_90
2.6
B_CELL_NAIVE_91
2.4
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