A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.7
nTPM
Monaco:
32.7
nTPM
Schmiedel:
15.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
HPA sample
nTPM
Classical monocyte nTPM: 14.7
Samples: 6
Max nTPM: 19.5
Min nTPM: 9.9
P10809_1003
9.9
P10809_1020
14.3
P10809_1039
19.5
P10809_1058
10.9
P10809_1080
16.2
P10809_1107
17.6
Intermediate monocyte nTPM: 18.4
Samples: 6
Max nTPM: 25.3
Min nTPM: 11.1
P10809_1004
25.3
P10809_1023
21.7
P10809_1042
19.8
P10809_1061
11.1
P10809_1081
13.5
P10809_1108
19.2
Non-classical monocyte nTPM: 22.7
Samples: 5
Max nTPM: 28.2
Min nTPM: 15.8
P10809_1005
28.2
P10809_1053
17.9
P10809_1072
26.4
P10809_1082
15.8
P10809_1109
25.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Monaco sample
nTPM
Classical monocyte nTPM: 23.3
Samples: 4
Max nTPM: 26.6
Min nTPM: 19.8
RHH5313_R3680
20.8
RHH5221_R3593
19.8
RHH5250_R3622
25.9
RHH5279_R3651
26.6
Intermediate monocyte nTPM: 32.7
Samples: 4
Max nTPM: 38.0
Min nTPM: 25.3
RHH5314_R3681
37.9
RHH5222_R3594
38.0
RHH5251_R3623
29.7
RHH5280_R3652
25.3
Non-classical monocyte nTPM: 32.1
Samples: 4
Max nTPM: 39.3
Min nTPM: 21.2
RHH5315_R3682
39.3
RHH5223_R3595
21.2
RHH5252_R3624
38.0
RHH5281_R3653
29.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
Schmiedel sample id
TPM
Classical monocyte TPM: 13.1
Samples: 91
Max TPM: 32.2
Min TPM: 4.1
MONOCYTES_1
32.2
MONOCYTES_2
29.1
MONOCYTES_3
22.5
MONOCYTES_4
22.0
MONOCYTES_5
21.6
MONOCYTES_6
21.3
MONOCYTES_7
20.6
MONOCYTES_8
20.6
MONOCYTES_9
20.4
MONOCYTES_10
20.4
MONOCYTES_11
20.3
MONOCYTES_12
20.2
MONOCYTES_13
20.1
MONOCYTES_14
19.9
MONOCYTES_15
19.6
MONOCYTES_16
19.3
MONOCYTES_17
19.1
MONOCYTES_18
18.8
MONOCYTES_19
18.8
MONOCYTES_20
18.7
MONOCYTES_21
18.6
MONOCYTES_22
18.0
MONOCYTES_23
17.7
MONOCYTES_24
17.6
MONOCYTES_25
17.6
MONOCYTES_26
17.2
MONOCYTES_27
17.0
MONOCYTES_28
16.9
MONOCYTES_29
16.6
MONOCYTES_30
16.6
MONOCYTES_31
16.3
MONOCYTES_32
16.2
MONOCYTES_33
16.0
MONOCYTES_34
15.8
MONOCYTES_35
15.3
MONOCYTES_36
15.2
MONOCYTES_37
14.5
MONOCYTES_38
13.7
MONOCYTES_39
13.3
MONOCYTES_40
13.1
MONOCYTES_41
13.0
MONOCYTES_42
12.5
MONOCYTES_43
12.2
MONOCYTES_44
12.1
MONOCYTES_45
11.7
MONOCYTES_46
11.7
MONOCYTES_47
11.6
MONOCYTES_48
11.5
MONOCYTES_49
11.2
MONOCYTES_50
11.1
MONOCYTES_51
10.8
MONOCYTES_52
10.5
MONOCYTES_53
10.3
MONOCYTES_54
10.3
MONOCYTES_55
10.2
MONOCYTES_56
10.2
MONOCYTES_57
10.1
MONOCYTES_58
10.0
MONOCYTES_59
9.9
MONOCYTES_60
9.9
MONOCYTES_61
9.6
MONOCYTES_62
9.2
MONOCYTES_63
9.2
MONOCYTES_64
9.2
MONOCYTES_65
9.1
MONOCYTES_66
9.0
MONOCYTES_67
8.5
MONOCYTES_68
8.4
MONOCYTES_69
8.3
MONOCYTES_70
8.2
MONOCYTES_71
8.1
MONOCYTES_72
8.1
MONOCYTES_73
8.0
MONOCYTES_74
7.8
MONOCYTES_75
7.7
MONOCYTES_76
7.6
MONOCYTES_77
7.4
MONOCYTES_78
7.3
MONOCYTES_79
7.3
MONOCYTES_80
7.0
MONOCYTES_81
6.5
MONOCYTES_82
6.4
MONOCYTES_83
6.0
MONOCYTES_84
5.9
MONOCYTES_85
5.8
MONOCYTES_86
5.6
MONOCYTES_87
5.6
MONOCYTES_88
5.4
MONOCYTES_89
5.4
MONOCYTES_90
4.4
MONOCYTES_91
4.1
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Non-classical monocyte TPM: 15.8
Samples: 90
Max TPM: 37.1
Min TPM: 3.9
M2_1
37.1
M2_2
31.9
M2_3
31.7
M2_4
30.7
M2_5
30.2
M2_6
29.8
M2_7
28.1
M2_8
27.8
M2_9
27.1
M2_10
26.9
M2_11
26.0
M2_12
25.0
M2_13
24.6
M2_14
24.4
M2_15
24.1
M2_16
23.3
M2_17
23.2
M2_18
22.4
M2_19
21.6
M2_20
21.5
M2_21
21.5
M2_22
21.0
M2_23
20.9
M2_24
20.2
M2_25
20.1
M2_26
19.5
M2_27
19.2
M2_28
19.1
M2_29
19.1
M2_30
19.1
M2_31
18.5
M2_32
18.4
M2_33
18.3
M2_34
18.2
M2_35
17.6
M2_36
17.5
M2_37
16.6
M2_38
16.6
M2_39
16.3
M2_40
16.2
M2_41
15.9
M2_42
15.7
M2_43
15.5
M2_44
15.3
M2_45
15.3
M2_46
15.2
M2_47
15.0
M2_48
15.0
M2_49
14.9
M2_50
14.9
M2_51
14.4
M2_52
14.3
M2_53
14.3
M2_54
14.3
M2_55
14.1
M2_56
14.0
M2_57
13.6
M2_58
13.4
M2_59
12.9
M2_60
11.8
M2_61
11.8
M2_62
11.4
M2_63
11.3
M2_64
10.8
M2_65
10.4
M2_66
10.2
M2_67
9.7
M2_68
9.6
M2_69
9.0
M2_70
9.0
M2_71
8.9
M2_72
8.8
M2_73
8.6
M2_74
7.2
M2_75
7.0
M2_76
6.9
M2_77
6.8
M2_78
6.7
M2_79
6.7
M2_80
6.1
M2_81
6.0
M2_82
5.3
M2_83
5.3
M2_84
5.2
M2_85
5.2
M2_86
4.6
M2_87
4.6
M2_88
4.1
M2_89
4.1
M2_90
3.9
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