A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.9
nTPM
Monaco:
51.0
nTPM
Schmiedel:
41.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.9
HPA sample
nTPM
NK-cell nTPM: 27.8
Samples: 6
Max nTPM: 36.5
Min nTPM: 17.1
P10809_1013
17.1
P10809_1033
36.5
P10809_1052
26.8
P10809_1071
24.7
P10809_1093
35.1
P10809_1103
26.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
Monaco sample
nTPM
NK-cell nTPM: 50.9
Samples: 4
Max nTPM: 62.8
Min nTPM: 43.5
RHH5316_R3683
62.8
RHH5224_R3596
44.4
RHH5253_R3625
43.5
RHH5282_R3654
53.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.2
Schmiedel sample id
TPM
NK-cell TPM: 41.2
Samples: 90
Max TPM: 93.0
Min TPM: 9.3
NK_1
93.0
NK_2
87.4
NK_3
86.3
NK_4
85.9
NK_5
83.9
NK_6
77.8
NK_7
77.2
NK_8
69.9
NK_9
68.1
NK_10
64.6
NK_11
64.5
NK_12
62.7
NK_13
61.7
NK_14
61.4
NK_15
59.6
NK_16
59.0
NK_17
58.4
NK_18
57.3
NK_19
57.3
NK_20
56.7
NK_21
56.0
NK_22
55.7
NK_23
55.6
NK_24
54.8
NK_25
54.2
NK_26
53.5
NK_27
53.5
NK_28
51.6
NK_29
51.0
NK_30
50.7
NK_31
48.3
NK_32
47.5
NK_33
47.2
NK_34
45.5
NK_35
45.3
NK_36
44.0
NK_37
43.4
NK_38
43.2
NK_39
43.2
NK_40
43.0
NK_41
42.3
NK_42
41.6
NK_43
40.4
NK_44
39.9
NK_45
38.7
NK_46
38.3
NK_47
38.2
NK_48
37.9
NK_49
37.4
NK_50
37.0
NK_51
33.7
NK_52
33.5
NK_53
33.3
NK_54
32.7
NK_55
31.2
NK_56
30.9
NK_57
30.6
NK_58
30.3
NK_59
29.8
NK_60
29.6
NK_61
29.3
NK_62
28.8
NK_63
28.6
NK_64
28.0
NK_65
26.1
NK_66
25.5
NK_67
25.5
NK_68
25.3
NK_69
24.8
NK_70
24.5
NK_71
24.4
NK_72
24.3
NK_73
23.3
NK_74
22.8
NK_75
21.8
NK_76
21.2
NK_77
20.8
NK_78
19.7
NK_79
19.6
NK_80
19.3
NK_81
17.9
NK_82
17.3
NK_83
16.7
NK_84
15.2
NK_85
15.0
NK_86
11.9
NK_87
11.9
NK_88
11.2
NK_89
9.8
NK_90
9.3
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