A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.5
nTPM
Monaco:
74.9
nTPM
Schmiedel:
26.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
HPA sample
nTPM
Memory B-cell nTPM: 20.5
Samples: 6
Max nTPM: 29.9
Min nTPM: 13.8
P10809_1017
17.3
P10809_1025
29.9
P10809_1044
26.8
P10809_1063
13.8
P10809_1092
15.0
P10809_1105
20.4
Naive B-cell nTPM: 13.1
Samples: 6
Max nTPM: 19.4
Min nTPM: 7.7
P10809_1011
9.8
P10809_1029
18.4
P10809_1048
7.7
P10809_1067
7.9
P10809_1091
15.2
P10809_1104
19.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 36.9
Samples: 4
Max nTPM: 39.9
Min nTPM: 33.0
RHH5310_R3677
38.5
RHH5218_R3590
36.1
RHH5247_R3619
33.0
RHH5276_R3648
39.9
Naive B-cell nTPM: 28.9
Samples: 4
Max nTPM: 42.0
Min nTPM: 8.2
RHH5308_R3675
29.0
RHH5216_R3588
42.0
RHH5245_R3617
8.2
RHH5274_R3646
36.5
Non-switched memory B-cell nTPM: 33.0
Samples: 4
Max nTPM: 40.4
Min nTPM: 29.0
RHH5309_R3676
32.4
RHH5217_R3589
40.4
RHH5246_R3618
29.0
RHH5275_R3647
30.0
Plasmablast nTPM: 74.9
Samples: 4
Max nTPM: 87.8
Min nTPM: 66.8
RHH5312_R3679
76.5
RHH5220_R3592
87.8
RHH5249_R3621
66.8
RHH5278_R3650
68.5
Switched memory B-cell nTPM: 35.6
Samples: 4
Max nTPM: 36.8
Min nTPM: 34.7
RHH5311_R3678
35.6
RHH5219_R3591
34.7
RHH5248_R3620
36.8
RHH5277_R3649
35.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
Schmiedel sample id
TPM
Naive B-cell TPM: 26.5
Samples: 91
Max TPM: 45.4
Min TPM: 15.2
B_CELL_NAIVE_1
45.4
B_CELL_NAIVE_2
43.2
B_CELL_NAIVE_3
41.5
B_CELL_NAIVE_4
39.1
B_CELL_NAIVE_5
38.5
B_CELL_NAIVE_6
38.2
B_CELL_NAIVE_7
38.0
B_CELL_NAIVE_8
37.3
B_CELL_NAIVE_9
37.1
B_CELL_NAIVE_10
35.3
B_CELL_NAIVE_11
35.1
B_CELL_NAIVE_12
34.1
B_CELL_NAIVE_13
33.7
B_CELL_NAIVE_14
32.4
B_CELL_NAIVE_15
32.3
B_CELL_NAIVE_16
31.9
B_CELL_NAIVE_17
31.7
B_CELL_NAIVE_18
31.0
B_CELL_NAIVE_19
30.8
B_CELL_NAIVE_20
30.5
B_CELL_NAIVE_21
30.1
B_CELL_NAIVE_22
29.8
B_CELL_NAIVE_23
29.8
B_CELL_NAIVE_24
29.6
B_CELL_NAIVE_25
28.8
B_CELL_NAIVE_26
28.4
B_CELL_NAIVE_27
27.8
B_CELL_NAIVE_28
27.7
B_CELL_NAIVE_29
27.7
B_CELL_NAIVE_30
27.7
B_CELL_NAIVE_31
27.6
B_CELL_NAIVE_32
27.3
B_CELL_NAIVE_33
27.3
B_CELL_NAIVE_34
27.0
B_CELL_NAIVE_35
26.8
B_CELL_NAIVE_36
26.7
B_CELL_NAIVE_37
26.5
B_CELL_NAIVE_38
26.4
B_CELL_NAIVE_39
26.3
B_CELL_NAIVE_40
26.2
B_CELL_NAIVE_41
26.0
B_CELL_NAIVE_42
26.0
B_CELL_NAIVE_43
25.9
B_CELL_NAIVE_44
25.9
B_CELL_NAIVE_45
25.9
B_CELL_NAIVE_46
25.8
B_CELL_NAIVE_47
25.5
B_CELL_NAIVE_48
25.5
B_CELL_NAIVE_49
25.5
B_CELL_NAIVE_50
25.3
B_CELL_NAIVE_51
25.2
B_CELL_NAIVE_52
24.8
B_CELL_NAIVE_53
24.7
B_CELL_NAIVE_54
24.6
B_CELL_NAIVE_55
24.5
B_CELL_NAIVE_56
24.1
B_CELL_NAIVE_57
23.9
B_CELL_NAIVE_58
23.9
B_CELL_NAIVE_59
23.8
B_CELL_NAIVE_60
23.6
B_CELL_NAIVE_61
23.6
B_CELL_NAIVE_62
23.4
B_CELL_NAIVE_63
23.4
B_CELL_NAIVE_64
23.3
B_CELL_NAIVE_65
23.0
B_CELL_NAIVE_66
23.0
B_CELL_NAIVE_67
23.0
B_CELL_NAIVE_68
22.6
B_CELL_NAIVE_69
22.4
B_CELL_NAIVE_70
22.2
B_CELL_NAIVE_71
22.2
B_CELL_NAIVE_72
22.0
B_CELL_NAIVE_73
21.7
B_CELL_NAIVE_74
21.3
B_CELL_NAIVE_75
21.1
B_CELL_NAIVE_76
20.7
B_CELL_NAIVE_77
20.6
B_CELL_NAIVE_78
19.9
B_CELL_NAIVE_79
19.8
B_CELL_NAIVE_80
19.8
B_CELL_NAIVE_81
19.7
B_CELL_NAIVE_82
19.5
B_CELL_NAIVE_83
19.4
B_CELL_NAIVE_84
19.4
B_CELL_NAIVE_85
18.8
B_CELL_NAIVE_86
18.7
B_CELL_NAIVE_87
18.6
B_CELL_NAIVE_88
17.5
B_CELL_NAIVE_89
16.7
B_CELL_NAIVE_90
16.3
B_CELL_NAIVE_91
15.2
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