A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.5
nTPM
Monaco:
84.4
nTPM
Schmiedel:
78.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.5
HPA sample
nTPM
Classical monocyte nTPM: 28.6
Samples: 6
Max nTPM: 39.8
Min nTPM: 20.1
P10809_1003
20.1
P10809_1020
39.8
P10809_1039
38.1
P10809_1058
21.0
P10809_1080
25.3
P10809_1107
27.5
Intermediate monocyte nTPM: 37.8
Samples: 6
Max nTPM: 47.6
Min nTPM: 29.0
P10809_1004
32.6
P10809_1023
36.6
P10809_1042
39.1
P10809_1061
47.6
P10809_1081
29.0
P10809_1108
42.0
Non-classical monocyte nTPM: 39.5
Samples: 5
Max nTPM: 52.1
Min nTPM: 27.0
P10809_1005
30.8
P10809_1053
45.2
P10809_1072
52.1
P10809_1082
27.0
P10809_1109
42.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.4
Monaco sample
nTPM
Classical monocyte nTPM: 84.4
Samples: 4
Max nTPM: 100.1
Min nTPM: 68.9
RHH5313_R3680
68.9
RHH5221_R3593
100.1
RHH5250_R3622
90.2
RHH5279_R3651
78.2
Intermediate monocyte nTPM: 75.7
Samples: 4
Max nTPM: 83.8
Min nTPM: 66.1
RHH5314_R3681
66.1
RHH5222_R3594
72.5
RHH5251_R3623
80.2
RHH5280_R3652
83.8
Non-classical monocyte nTPM: 74.8
Samples: 4
Max nTPM: 96.6
Min nTPM: 61.3
RHH5315_R3682
69.4
RHH5223_R3595
61.3
RHH5252_R3624
72.0
RHH5281_R3653
96.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.8
Schmiedel sample id
TPM
Classical monocyte TPM: 78.8
Samples: 91
Max TPM: 102.5
Min TPM: 56.1
MONOCYTES_1
102.5
MONOCYTES_2
101.1
MONOCYTES_3
100.9
MONOCYTES_4
100.1
MONOCYTES_5
98.1
MONOCYTES_6
96.2
MONOCYTES_7
93.0
MONOCYTES_8
92.1
MONOCYTES_9
91.5
MONOCYTES_10
91.3
MONOCYTES_11
91.1
MONOCYTES_12
90.3
MONOCYTES_13
89.6
MONOCYTES_14
89.6
MONOCYTES_15
89.4
MONOCYTES_16
89.4
MONOCYTES_17
89.3
MONOCYTES_18
89.0
MONOCYTES_19
88.9
MONOCYTES_20
87.7
MONOCYTES_21
87.0
MONOCYTES_22
86.9
MONOCYTES_23
86.7
MONOCYTES_24
86.3
MONOCYTES_25
86.2
MONOCYTES_26
85.9
MONOCYTES_27
84.4
MONOCYTES_28
84.2
MONOCYTES_29
84.1
MONOCYTES_30
84.1
MONOCYTES_31
83.4
MONOCYTES_32
83.0
MONOCYTES_33
82.7
MONOCYTES_34
82.3
MONOCYTES_35
81.3
MONOCYTES_36
81.3
MONOCYTES_37
81.2
MONOCYTES_38
80.9
MONOCYTES_39
80.8
MONOCYTES_40
80.6
MONOCYTES_41
80.6
MONOCYTES_42
80.3
MONOCYTES_43
80.1
MONOCYTES_44
80.1
MONOCYTES_45
80.0
MONOCYTES_46
79.3
MONOCYTES_47
79.3
MONOCYTES_48
79.0
MONOCYTES_49
79.0
MONOCYTES_50
78.5
MONOCYTES_51
77.5
MONOCYTES_52
77.5
MONOCYTES_53
77.3
MONOCYTES_54
77.3
MONOCYTES_55
77.1
MONOCYTES_56
76.7
MONOCYTES_57
75.4
MONOCYTES_58
75.2
MONOCYTES_59
75.1
MONOCYTES_60
74.7
MONOCYTES_61
74.0
MONOCYTES_62
73.6
MONOCYTES_63
73.5
MONOCYTES_64
73.3
MONOCYTES_65
72.4
MONOCYTES_66
72.1
MONOCYTES_67
71.5
MONOCYTES_68
71.2
MONOCYTES_69
70.9
MONOCYTES_70
69.9
MONOCYTES_71
69.8
MONOCYTES_72
69.4
MONOCYTES_73
68.9
MONOCYTES_74
68.8
MONOCYTES_75
68.6
MONOCYTES_76
67.7
MONOCYTES_77
67.6
MONOCYTES_78
67.6
MONOCYTES_79
67.3
MONOCYTES_80
66.4
MONOCYTES_81
64.3
MONOCYTES_82
64.1
MONOCYTES_83
64.1
MONOCYTES_84
62.9
MONOCYTES_85
62.5
MONOCYTES_86
61.1
MONOCYTES_87
61.0
MONOCYTES_88
59.4
MONOCYTES_89
59.3
MONOCYTES_90
58.0
MONOCYTES_91
56.1
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Non-classical monocyte TPM: 30.4
Samples: 90
Max TPM: 44.4
Min TPM: 23.8
M2_1
44.4
M2_2
38.4
M2_3
37.5
M2_4
37.4
M2_5
37.1
M2_6
35.9
M2_7
35.6
M2_8
35.0
M2_9
34.8
M2_10
34.8
M2_11
34.2
M2_12
34.2
M2_13
34.1
M2_14
34.1
M2_15
33.9
M2_16
33.7
M2_17
33.6
M2_18
33.6
M2_19
33.4
M2_20
33.3
M2_21
33.2
M2_22
33.0
M2_23
32.8
M2_24
32.5
M2_25
32.3
M2_26
32.3
M2_27
32.0
M2_28
31.8
M2_29
31.8
M2_30
31.5
M2_31
31.5
M2_32
31.4
M2_33
31.2
M2_34
31.1
M2_35
31.0
M2_36
30.9
M2_37
30.8
M2_38
30.7
M2_39
30.6
M2_40
30.6
M2_41
30.6
M2_42
30.3
M2_43
30.2
M2_44
30.2
M2_45
30.1
M2_46
30.1
M2_47
30.0
M2_48
30.0
M2_49
29.9
M2_50
29.9
M2_51
29.7
M2_52
29.7
M2_53
29.5
M2_54
29.5
M2_55
29.5
M2_56
29.5
M2_57
29.2
M2_58
28.8
M2_59
28.8
M2_60
28.7
M2_61
28.6
M2_62
28.6
M2_63
28.5
M2_64
28.2
M2_65
28.1
M2_66
28.0
M2_67
27.8
M2_68
27.7
M2_69
27.6
M2_70
27.4
M2_71
27.3
M2_72
27.2
M2_73
27.0
M2_74
26.9
M2_75
26.9
M2_76
26.8
M2_77
26.7
M2_78
26.7
M2_79
26.2
M2_80
26.1
M2_81
26.1
M2_82
26.0
M2_83
25.8
M2_84
25.6
M2_85
25.5
M2_86
25.2
M2_87
24.2
M2_88
24.1
M2_89
23.9
M2_90
23.8
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