A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.6
nTPM
Monaco:
49.6
nTPM
Schmiedel:
61.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
HPA sample
nTPM
NK-cell nTPM: 14.6
Samples: 6
Max nTPM: 26.7
Min nTPM: 0.1
P10809_1013
10.7
P10809_1033
26.7
P10809_1052
9.6
P10809_1071
18.1
P10809_1093
0.1
P10809_1103
22.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.6
Monaco sample
nTPM
NK-cell nTPM: 49.7
Samples: 4
Max nTPM: 66.9
Min nTPM: 37.3
RHH5316_R3683
54.3
RHH5224_R3596
66.9
RHH5253_R3625
37.3
RHH5282_R3654
40.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.7
Schmiedel sample id
TPM
NK-cell TPM: 61.7
Samples: 90
Max TPM: 130.9
Min TPM: 32.8
NK_1
130.9
NK_2
112.8
NK_3
105.9
NK_4
98.9
NK_5
93.5
NK_6
88.7
NK_7
88.1
NK_8
88.0
NK_9
87.8
NK_10
86.4
NK_11
83.8
NK_12
82.1
NK_13
80.0
NK_14
79.5
NK_15
77.5
NK_16
77.2
NK_17
76.4
NK_18
74.7
NK_19
74.2
NK_20
72.6
NK_21
72.5
NK_22
72.0
NK_23
71.0
NK_24
69.6
NK_25
67.9
NK_26
67.9
NK_27
67.7
NK_28
67.2
NK_29
67.0
NK_30
66.4
NK_31
65.9
NK_32
65.4
NK_33
63.1
NK_34
62.1
NK_35
61.5
NK_36
61.2
NK_37
61.2
NK_38
58.5
NK_39
58.3
NK_40
58.0
NK_41
57.9
NK_42
57.4
NK_43
56.8
NK_44
56.7
NK_45
56.5
NK_46
56.5
NK_47
56.5
NK_48
56.4
NK_49
56.4
NK_50
55.9
NK_51
55.6
NK_52
55.3
NK_53
55.2
NK_54
55.0
NK_55
54.9
NK_56
54.8
NK_57
54.2
NK_58
53.6
NK_59
53.3
NK_60
52.5
NK_61
52.5
NK_62
52.2
NK_63
51.8
NK_64
51.4
NK_65
51.0
NK_66
50.8
NK_67
50.7
NK_68
50.1
NK_69
49.5
NK_70
49.3
NK_71
49.2
NK_72
48.7
NK_73
48.5
NK_74
48.5
NK_75
47.5
NK_76
47.2
NK_77
47.0
NK_78
46.9
NK_79
46.3
NK_80
43.7
NK_81
43.3
NK_82
42.5
NK_83
42.2
NK_84
41.5
NK_85
41.4
NK_86
40.4
NK_87
39.3
NK_88
35.3
NK_89
34.3
NK_90
32.8
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