A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
298.5
nTPM
Monaco:
954.7
nTPM
Schmiedel:
1181.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
298.5
HPA sample
nTPM
Memory B-cell nTPM: 298.5
Samples: 6
Max nTPM: 431.1
Min nTPM: 208.4
P10809_1017
431.1
P10809_1025
308.7
P10809_1044
227.7
P10809_1063
325.5
P10809_1092
208.4
P10809_1105
289.7
Naive B-cell nTPM: 264.3
Samples: 6
Max nTPM: 378.8
Min nTPM: 206.1
P10809_1011
305.8
P10809_1029
244.2
P10809_1048
378.8
P10809_1067
230.2
P10809_1091
206.1
P10809_1104
221.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
954.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 790.3
Samples: 4
Max nTPM: 870.7
Min nTPM: 698.6
RHH5310_R3677
762.5
RHH5218_R3590
698.6
RHH5247_R3619
829.3
RHH5276_R3648
870.7
Naive B-cell nTPM: 778.0
Samples: 4
Max nTPM: 856.7
Min nTPM: 740.7
RHH5308_R3675
764.7
RHH5216_R3588
856.7
RHH5245_R3617
740.7
RHH5274_R3646
749.9
Non-switched memory B-cell nTPM: 854.1
Samples: 4
Max nTPM: 914.7
Min nTPM: 789.6
RHH5309_R3676
846.9
RHH5217_R3589
865.1
RHH5246_R3618
914.7
RHH5275_R3647
789.6
Plasmablast nTPM: 922.5
Samples: 4
Max nTPM: 991.6
Min nTPM: 806.4
RHH5312_R3679
938.2
RHH5220_R3592
991.6
RHH5249_R3621
953.9
RHH5278_R3650
806.4
Switched memory B-cell nTPM: 954.7
Samples: 4
Max nTPM: 1065.8
Min nTPM: 842.2
RHH5311_R3678
1065.8
RHH5219_R3591
863.9
RHH5248_R3620
1046.8
RHH5277_R3649
842.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1181.4
Schmiedel sample id
TPM
Naive B-cell TPM: 1181.4
Samples: 91
Max TPM: 1610.0
Min TPM: 982.9
B_CELL_NAIVE_1
1610.0
B_CELL_NAIVE_2
1506.2
B_CELL_NAIVE_3
1455.6
B_CELL_NAIVE_4
1432.0
B_CELL_NAIVE_5
1425.7
B_CELL_NAIVE_6
1409.4
B_CELL_NAIVE_7
1378.7
B_CELL_NAIVE_8
1372.6
B_CELL_NAIVE_9
1362.6
B_CELL_NAIVE_10
1359.7
B_CELL_NAIVE_11
1353.8
B_CELL_NAIVE_12
1281.5
B_CELL_NAIVE_13
1280.1
B_CELL_NAIVE_14
1276.2
B_CELL_NAIVE_15
1272.7
B_CELL_NAIVE_16
1265.8
B_CELL_NAIVE_17
1260.9
B_CELL_NAIVE_18
1258.4
B_CELL_NAIVE_19
1255.6
B_CELL_NAIVE_20
1247.2
B_CELL_NAIVE_21
1247.0
B_CELL_NAIVE_22
1244.4
B_CELL_NAIVE_23
1241.2
B_CELL_NAIVE_24
1238.0
B_CELL_NAIVE_25
1237.1
B_CELL_NAIVE_26
1234.1
B_CELL_NAIVE_27
1234.1
B_CELL_NAIVE_28
1231.7
B_CELL_NAIVE_29
1226.0
B_CELL_NAIVE_30
1224.2
B_CELL_NAIVE_31
1215.0
B_CELL_NAIVE_32
1214.5
B_CELL_NAIVE_33
1214.0
B_CELL_NAIVE_34
1210.3
B_CELL_NAIVE_35
1208.6
B_CELL_NAIVE_36
1201.6
B_CELL_NAIVE_37
1200.2
B_CELL_NAIVE_38
1193.6
B_CELL_NAIVE_39
1190.5
B_CELL_NAIVE_40
1182.2
B_CELL_NAIVE_41
1180.6
B_CELL_NAIVE_42
1179.7
B_CELL_NAIVE_43
1179.6
B_CELL_NAIVE_44
1174.8
B_CELL_NAIVE_45
1170.6
B_CELL_NAIVE_46
1168.6
B_CELL_NAIVE_47
1168.4
B_CELL_NAIVE_48
1161.4
B_CELL_NAIVE_49
1161.0
B_CELL_NAIVE_50
1156.7
B_CELL_NAIVE_51
1152.0
B_CELL_NAIVE_52
1150.6
B_CELL_NAIVE_53
1141.5
B_CELL_NAIVE_54
1136.9
B_CELL_NAIVE_55
1132.0
B_CELL_NAIVE_56
1130.5
B_CELL_NAIVE_57
1127.9
B_CELL_NAIVE_58
1124.9
B_CELL_NAIVE_59
1123.9
B_CELL_NAIVE_60
1115.8
B_CELL_NAIVE_61
1113.0
B_CELL_NAIVE_62
1112.5
B_CELL_NAIVE_63
1105.0
B_CELL_NAIVE_64
1103.3
B_CELL_NAIVE_65
1102.9
B_CELL_NAIVE_66
1102.7
B_CELL_NAIVE_67
1100.1
B_CELL_NAIVE_68
1098.7
B_CELL_NAIVE_69
1096.4
B_CELL_NAIVE_70
1093.5
B_CELL_NAIVE_71
1092.9
B_CELL_NAIVE_72
1092.6
B_CELL_NAIVE_73
1089.8
B_CELL_NAIVE_74
1082.2
B_CELL_NAIVE_75
1080.8
B_CELL_NAIVE_76
1077.6
B_CELL_NAIVE_77
1076.0
B_CELL_NAIVE_78
1065.8
B_CELL_NAIVE_79
1059.5
B_CELL_NAIVE_80
1058.9
B_CELL_NAIVE_81
1049.5
B_CELL_NAIVE_82
1037.8
B_CELL_NAIVE_83
1035.7
B_CELL_NAIVE_84
1031.6
B_CELL_NAIVE_85
1030.8
B_CELL_NAIVE_86
1021.1
B_CELL_NAIVE_87
1021.1
B_CELL_NAIVE_88
1006.7
B_CELL_NAIVE_89
1001.0
B_CELL_NAIVE_90
992.7
B_CELL_NAIVE_91
982.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.