A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
471.1
nTPM
Monaco:
1392.5
nTPM
Schmiedel:
1590.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
471.1
HPA sample
nTPM
Classical monocyte nTPM: 402.6
Samples: 6
Max nTPM: 931.1
Min nTPM: 245.3
P10809_1003
931.1
P10809_1020
344.7
P10809_1039
291.5
P10809_1058
282.3
P10809_1080
245.3
P10809_1107
320.7
Intermediate monocyte nTPM: 405.8
Samples: 6
Max nTPM: 573.6
Min nTPM: 255.9
P10809_1004
573.6
P10809_1023
403.0
P10809_1042
364.6
P10809_1061
449.7
P10809_1081
255.9
P10809_1108
387.7
Non-classical monocyte nTPM: 471.1
Samples: 5
Max nTPM: 637.5
Min nTPM: 296.2
P10809_1005
563.0
P10809_1053
435.0
P10809_1072
637.5
P10809_1082
296.2
P10809_1109
423.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1392.5
Monaco sample
nTPM
Classical monocyte nTPM: 1260.7
Samples: 4
Max nTPM: 1350.5
Min nTPM: 1138.7
RHH5313_R3680
1138.7
RHH5221_R3593
1349.0
RHH5250_R3622
1350.5
RHH5279_R3651
1204.7
Intermediate monocyte nTPM: 1372.4
Samples: 4
Max nTPM: 1770.5
Min nTPM: 1036.8
RHH5314_R3681
1036.8
RHH5222_R3594
1339.6
RHH5251_R3623
1770.5
RHH5280_R3652
1342.5
Non-classical monocyte nTPM: 1392.4
Samples: 4
Max nTPM: 1518.4
Min nTPM: 1176.7
RHH5315_R3682
1483.2
RHH5223_R3595
1176.7
RHH5252_R3624
1518.4
RHH5281_R3653
1391.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1590.6
Schmiedel sample id
TPM
Classical monocyte TPM: 1421.6
Samples: 91
Max TPM: 1792.0
Min TPM: 1086.2
MONOCYTES_1
1792.0
MONOCYTES_2
1785.8
MONOCYTES_3
1775.4
MONOCYTES_4
1735.5
MONOCYTES_5
1675.4
MONOCYTES_6
1673.9
MONOCYTES_7
1669.0
MONOCYTES_8
1641.2
MONOCYTES_9
1617.4
MONOCYTES_10
1587.3
MONOCYTES_11
1575.7
MONOCYTES_12
1572.2
MONOCYTES_13
1568.2
MONOCYTES_14
1566.1
MONOCYTES_15
1558.9
MONOCYTES_16
1557.0
MONOCYTES_17
1552.7
MONOCYTES_18
1548.8
MONOCYTES_19
1537.9
MONOCYTES_20
1525.9
MONOCYTES_21
1522.4
MONOCYTES_22
1505.1
MONOCYTES_23
1502.7
MONOCYTES_24
1495.9
MONOCYTES_25
1494.3
MONOCYTES_26
1492.6
MONOCYTES_27
1480.0
MONOCYTES_28
1477.6
MONOCYTES_29
1476.3
MONOCYTES_30
1471.4
MONOCYTES_31
1467.6
MONOCYTES_32
1452.4
MONOCYTES_33
1451.5
MONOCYTES_34
1446.6
MONOCYTES_35
1443.9
MONOCYTES_36
1442.7
MONOCYTES_37
1432.5
MONOCYTES_38
1429.4
MONOCYTES_39
1428.3
MONOCYTES_40
1423.3
MONOCYTES_41
1417.7
MONOCYTES_42
1413.7
MONOCYTES_43
1411.2
MONOCYTES_44
1406.1
MONOCYTES_45
1405.2
MONOCYTES_46
1405.2
MONOCYTES_47
1404.3
MONOCYTES_48
1401.4
MONOCYTES_49
1400.0
MONOCYTES_50
1398.5
MONOCYTES_51
1395.6
MONOCYTES_52
1393.6
MONOCYTES_53
1385.1
MONOCYTES_54
1384.9
MONOCYTES_55
1384.6
MONOCYTES_56
1374.4
MONOCYTES_57
1372.6
MONOCYTES_58
1371.3
MONOCYTES_59
1369.2
MONOCYTES_60
1365.6
MONOCYTES_61
1359.4
MONOCYTES_62
1358.8
MONOCYTES_63
1353.1
MONOCYTES_64
1351.6
MONOCYTES_65
1346.6
MONOCYTES_66
1345.5
MONOCYTES_67
1331.3
MONOCYTES_68
1330.5
MONOCYTES_69
1329.2
MONOCYTES_70
1328.5
MONOCYTES_71
1324.6
MONOCYTES_72
1313.6
MONOCYTES_73
1310.1
MONOCYTES_74
1308.6
MONOCYTES_75
1302.2
MONOCYTES_76
1297.6
MONOCYTES_77
1294.4
MONOCYTES_78
1284.4
MONOCYTES_79
1283.1
MONOCYTES_80
1274.2
MONOCYTES_81
1257.7
MONOCYTES_82
1251.6
MONOCYTES_83
1245.6
MONOCYTES_84
1237.8
MONOCYTES_85
1233.5
MONOCYTES_86
1224.7
MONOCYTES_87
1210.4
MONOCYTES_88
1199.9
MONOCYTES_89
1160.4
MONOCYTES_90
1119.2
MONOCYTES_91
1086.2
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Non-classical monocyte TPM: 1590.6
Samples: 90
Max TPM: 2018.7
Min TPM: 1303.0
M2_1
2018.7
M2_2
2007.1
M2_3
1970.3
M2_4
1965.7
M2_5
1951.9
M2_6
1880.8
M2_7
1859.8
M2_8
1830.3
M2_9
1829.6
M2_10
1823.0
M2_11
1822.5
M2_12
1813.5
M2_13
1802.4
M2_14
1782.5
M2_15
1772.6
M2_16
1758.6
M2_17
1748.5
M2_18
1747.4
M2_19
1739.7
M2_20
1718.3
M2_21
1711.9
M2_22
1697.1
M2_23
1688.5
M2_24
1684.7
M2_25
1684.6
M2_26
1678.1
M2_27
1675.2
M2_28
1663.9
M2_29
1658.9
M2_30
1654.1
M2_31
1652.7
M2_32
1641.4
M2_33
1635.6
M2_34
1630.2
M2_35
1623.4
M2_36
1621.2
M2_37
1620.4
M2_38
1617.4
M2_39
1616.3
M2_40
1604.6
M2_41
1601.3
M2_42
1597.6
M2_43
1586.3
M2_44
1580.4
M2_45
1576.6
M2_46
1571.2
M2_47
1564.1
M2_48
1561.7
M2_49
1558.9
M2_50
1551.3
M2_51
1544.2
M2_52
1540.2
M2_53
1527.8
M2_54
1522.1
M2_55
1519.3
M2_56
1501.7
M2_57
1501.7
M2_58
1499.9
M2_59
1499.8
M2_60
1495.3
M2_61
1491.9
M2_62
1475.3
M2_63
1463.1
M2_64
1463.1
M2_65
1459.0
M2_66
1456.9
M2_67
1454.9
M2_68
1448.7
M2_69
1448.5
M2_70
1442.9
M2_71
1430.3
M2_72
1429.6
M2_73
1429.2
M2_74
1426.8
M2_75
1421.6
M2_76
1421.5
M2_77
1417.9
M2_78
1413.0
M2_79
1403.9
M2_80
1397.0
M2_81
1394.0
M2_82
1390.4
M2_83
1387.0
M2_84
1386.5
M2_85
1385.4
M2_86
1338.7
M2_87
1326.9
M2_88
1323.3
M2_89
1319.6
M2_90
1303.0
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