A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
307.9
nTPM
Monaco:
514.3
nTPM
Schmiedel:
739.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
307.9
HPA sample
nTPM
NK-cell nTPM: 307.9
Samples: 6
Max nTPM: 359.9
Min nTPM: 247.9
P10809_1013
317.3
P10809_1033
278.8
P10809_1052
247.9
P10809_1071
359.9
P10809_1093
314.4
P10809_1103
329.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
514.3
Monaco sample
nTPM
NK-cell nTPM: 514.3
Samples: 4
Max nTPM: 607.0
Min nTPM: 402.8
RHH5316_R3683
402.8
RHH5224_R3596
607.0
RHH5253_R3625
489.0
RHH5282_R3654
558.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
739.0
Schmiedel sample id
TPM
NK-cell TPM: 738.9
Samples: 90
Max TPM: 1019.3
Min TPM: 558.1
NK_1
1019.3
NK_2
956.3
NK_3
954.4
NK_4
927.9
NK_5
922.1
NK_6
902.8
NK_7
875.5
NK_8
866.6
NK_9
863.7
NK_10
863.5
NK_11
862.0
NK_12
861.7
NK_13
854.6
NK_14
834.7
NK_15
834.3
NK_16
831.8
NK_17
830.0
NK_18
817.4
NK_19
815.6
NK_20
807.6
NK_21
804.5
NK_22
804.4
NK_23
795.4
NK_24
788.8
NK_25
788.4
NK_26
786.1
NK_27
783.5
NK_28
783.1
NK_29
781.6
NK_30
780.5
NK_31
780.0
NK_32
773.9
NK_33
772.6
NK_34
771.8
NK_35
765.5
NK_36
762.7
NK_37
760.0
NK_38
750.6
NK_39
747.7
NK_40
747.0
NK_41
744.7
NK_42
739.2
NK_43
738.7
NK_44
734.3
NK_45
732.4
NK_46
729.5
NK_47
729.1
NK_48
728.5
NK_49
728.1
NK_50
725.3
NK_51
725.1
NK_52
720.3
NK_53
711.4
NK_54
707.6
NK_55
706.4
NK_56
705.0
NK_57
700.5
NK_58
697.9
NK_59
696.8
NK_60
690.8
NK_61
690.0
NK_62
684.1
NK_63
678.8
NK_64
677.5
NK_65
670.3
NK_66
670.0
NK_67
669.6
NK_68
668.0
NK_69
667.0
NK_70
667.0
NK_71
666.2
NK_72
656.3
NK_73
653.6
NK_74
653.4
NK_75
652.7
NK_76
647.3
NK_77
646.3
NK_78
640.0
NK_79
634.5
NK_80
623.0
NK_81
620.7
NK_82
614.7
NK_83
604.4
NK_84
586.8
NK_85
584.5
NK_86
583.6
NK_87
575.6
NK_88
570.4
NK_89
569.5
NK_90
558.1
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