A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
1.0
nTPM
Schmiedel:
55.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
Memory B-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.0
P10809_1044
0.8
P10809_1063
1.7
P10809_1092
1.1
P10809_1105
0.1
Naive B-cell nTPM: 0.6
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.0
P10809_1011
0.1
P10809_1029
0.4
P10809_1048
0.0
P10809_1067
2.1
P10809_1091
0.4
P10809_1104
0.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5310_R3677
0.0
RHH5218_R3590
0.0
RHH5247_R3619
0.0
RHH5276_R3648
0.0
Naive B-cell nTPM: 0.2
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5308_R3675
0.0
RHH5216_R3588
0.4
RHH5245_R3617
0.2
RHH5274_R3646
0.0
Non-switched memory B-cell nTPM: 1.0
Samples: 4
Max nTPM: 2.6
Min nTPM: 0.0
RHH5309_R3676
0.0
RHH5217_R3589
2.6
RHH5246_R3618
1.4
RHH5275_R3647
0.1
Plasmablast nTPM: 0.7
Samples: 4
Max nTPM: 1.9
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.4
RHH5249_R3621
0.5
RHH5278_R3650
1.9
Switched memory B-cell nTPM: 0.2
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
0.0
RHH5248_R3620
0.5
RHH5277_R3649
0.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.1
Schmiedel sample id
TPM
Naive B-cell TPM: 55.2
Samples: 91
Max TPM: 69.3
Min TPM: 42.3
B_CELL_NAIVE_1
69.3
B_CELL_NAIVE_2
66.9
B_CELL_NAIVE_3
66.1
B_CELL_NAIVE_4
66.0
B_CELL_NAIVE_5
65.2
B_CELL_NAIVE_6
64.9
B_CELL_NAIVE_7
64.2
B_CELL_NAIVE_8
64.1
B_CELL_NAIVE_9
64.0
B_CELL_NAIVE_10
63.6
B_CELL_NAIVE_11
62.8
B_CELL_NAIVE_12
62.6
B_CELL_NAIVE_13
62.4
B_CELL_NAIVE_14
61.5
B_CELL_NAIVE_15
60.9
B_CELL_NAIVE_16
59.7
B_CELL_NAIVE_17
59.6
B_CELL_NAIVE_18
59.2
B_CELL_NAIVE_19
58.6
B_CELL_NAIVE_20
58.4
B_CELL_NAIVE_21
58.3
B_CELL_NAIVE_22
58.1
B_CELL_NAIVE_23
58.0
B_CELL_NAIVE_24
58.0
B_CELL_NAIVE_25
58.0
B_CELL_NAIVE_26
57.6
B_CELL_NAIVE_27
57.5
B_CELL_NAIVE_28
57.4
B_CELL_NAIVE_29
57.3
B_CELL_NAIVE_30
56.9
B_CELL_NAIVE_31
56.8
B_CELL_NAIVE_32
56.8
B_CELL_NAIVE_33
56.5
B_CELL_NAIVE_34
56.5
B_CELL_NAIVE_35
56.5
B_CELL_NAIVE_36
56.4
B_CELL_NAIVE_37
56.3
B_CELL_NAIVE_38
56.3
B_CELL_NAIVE_39
55.9
B_CELL_NAIVE_40
55.8
B_CELL_NAIVE_41
55.6
B_CELL_NAIVE_42
55.4
B_CELL_NAIVE_43
55.2
B_CELL_NAIVE_44
55.2
B_CELL_NAIVE_45
55.0
B_CELL_NAIVE_46
54.9
B_CELL_NAIVE_47
54.9
B_CELL_NAIVE_48
54.8
B_CELL_NAIVE_49
54.7
B_CELL_NAIVE_50
54.6
B_CELL_NAIVE_51
54.4
B_CELL_NAIVE_52
54.4
B_CELL_NAIVE_53
54.0
B_CELL_NAIVE_54
53.8
B_CELL_NAIVE_55
53.5
B_CELL_NAIVE_56
53.2
B_CELL_NAIVE_57
53.1
B_CELL_NAIVE_58
53.0
B_CELL_NAIVE_59
53.0
B_CELL_NAIVE_60
52.9
B_CELL_NAIVE_61
52.6
B_CELL_NAIVE_62
52.6
B_CELL_NAIVE_63
52.5
B_CELL_NAIVE_64
52.5
B_CELL_NAIVE_65
52.4
B_CELL_NAIVE_66
51.8
B_CELL_NAIVE_67
51.7
B_CELL_NAIVE_68
51.3
B_CELL_NAIVE_69
51.1
B_CELL_NAIVE_70
51.0
B_CELL_NAIVE_71
50.8
B_CELL_NAIVE_72
50.6
B_CELL_NAIVE_73
50.5
B_CELL_NAIVE_74
50.5
B_CELL_NAIVE_75
50.5
B_CELL_NAIVE_76
50.5
B_CELL_NAIVE_77
50.2
B_CELL_NAIVE_78
49.7
B_CELL_NAIVE_79
49.3
B_CELL_NAIVE_80
48.7
B_CELL_NAIVE_81
48.4
B_CELL_NAIVE_82
48.2
B_CELL_NAIVE_83
48.0
B_CELL_NAIVE_84
47.4
B_CELL_NAIVE_85
47.2
B_CELL_NAIVE_86
47.1
B_CELL_NAIVE_87
46.9
B_CELL_NAIVE_88
46.1
B_CELL_NAIVE_89
45.9
B_CELL_NAIVE_90
44.1
B_CELL_NAIVE_91
42.3
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The Human Protein Atlas project is funded
