A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
0.2
nTPM
Schmiedel:
43.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.1
P10809_1003
0.1
P10809_1020
0.1
P10809_1039
0.4
P10809_1058
0.2
P10809_1080
0.2
P10809_1107
0.3
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.2
P10809_1108
0.7
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
Monaco sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5313_R3680
0.1
RHH5221_R3593
0.0
RHH5250_R3622
0.4
RHH5279_R3651
0.3
Intermediate monocyte nTPM: 0.1
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
RHH5314_R3681
0.1
RHH5222_R3594
0.1
RHH5251_R3623
0.0
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.2
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.0
RHH5315_R3682
0.9
RHH5223_R3595
0.0
RHH5252_R3624
0.0
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.4
Schmiedel sample id
TPM
Classical monocyte TPM: 39.3
Samples: 91
Max TPM: 48.9
Min TPM: 30.4
MONOCYTES_1
48.9
MONOCYTES_2
48.8
MONOCYTES_3
48.6
MONOCYTES_4
48.3
MONOCYTES_5
48.1
MONOCYTES_6
47.9
MONOCYTES_7
47.5
MONOCYTES_8
46.8
MONOCYTES_9
46.8
MONOCYTES_10
46.0
MONOCYTES_11
45.9
MONOCYTES_12
45.8
MONOCYTES_13
45.5
MONOCYTES_14
44.7
MONOCYTES_15
44.5
MONOCYTES_16
44.3
MONOCYTES_17
44.0
MONOCYTES_18
43.2
MONOCYTES_19
43.2
MONOCYTES_20
43.1
MONOCYTES_21
43.1
MONOCYTES_22
42.7
MONOCYTES_23
42.6
MONOCYTES_24
41.9
MONOCYTES_25
41.8
MONOCYTES_26
41.8
MONOCYTES_27
41.1
MONOCYTES_28
41.0
MONOCYTES_29
41.0
MONOCYTES_30
40.8
MONOCYTES_31
40.7
MONOCYTES_32
40.5
MONOCYTES_33
40.5
MONOCYTES_34
40.3
MONOCYTES_35
40.3
MONOCYTES_36
40.1
MONOCYTES_37
40.0
MONOCYTES_38
39.8
MONOCYTES_39
39.7
MONOCYTES_40
39.7
MONOCYTES_41
39.7
MONOCYTES_42
39.5
MONOCYTES_43
39.5
MONOCYTES_44
39.4
MONOCYTES_45
39.2
MONOCYTES_46
39.2
MONOCYTES_47
39.1
MONOCYTES_48
39.1
MONOCYTES_49
38.9
MONOCYTES_50
38.6
MONOCYTES_51
38.3
MONOCYTES_52
38.1
MONOCYTES_53
38.1
MONOCYTES_54
37.9
MONOCYTES_55
37.9
MONOCYTES_56
37.9
MONOCYTES_57
37.9
MONOCYTES_58
37.8
MONOCYTES_59
37.7
MONOCYTES_60
37.6
MONOCYTES_61
37.4
MONOCYTES_62
37.4
MONOCYTES_63
37.2
MONOCYTES_64
37.2
MONOCYTES_65
36.4
MONOCYTES_66
36.0
MONOCYTES_67
36.0
MONOCYTES_68
36.0
MONOCYTES_69
35.8
MONOCYTES_70
35.5
MONOCYTES_71
35.5
MONOCYTES_72
35.5
MONOCYTES_73
35.3
MONOCYTES_74
35.1
MONOCYTES_75
34.6
MONOCYTES_76
34.6
MONOCYTES_77
34.5
MONOCYTES_78
34.1
MONOCYTES_79
33.9
MONOCYTES_80
33.7
MONOCYTES_81
33.6
MONOCYTES_82
33.4
MONOCYTES_83
33.3
MONOCYTES_84
32.7
MONOCYTES_85
32.6
MONOCYTES_86
32.2
MONOCYTES_87
32.0
MONOCYTES_88
32.0
MONOCYTES_89
31.5
MONOCYTES_90
31.4
MONOCYTES_91
30.4
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Non-classical monocyte TPM: 43.4
Samples: 90
Max TPM: 57.7
Min TPM: 31.9
M2_1
57.7
M2_2
54.2
M2_3
53.5
M2_4
52.4
M2_5
52.2
M2_6
51.3
M2_7
51.2
M2_8
50.6
M2_9
50.5
M2_10
50.2
M2_11
50.1
M2_12
49.9
M2_13
49.5
M2_14
48.9
M2_15
48.8
M2_16
48.7
M2_17
48.0
M2_18
47.9
M2_19
47.8
M2_20
47.2
M2_21
47.2
M2_22
46.7
M2_23
46.6
M2_24
46.6
M2_25
46.5
M2_26
46.4
M2_27
46.3
M2_28
46.1
M2_29
46.0
M2_30
45.8
M2_31
45.8
M2_32
45.6
M2_33
45.5
M2_34
45.3
M2_35
45.3
M2_36
44.7
M2_37
44.6
M2_38
44.6
M2_39
44.6
M2_40
44.4
M2_41
44.4
M2_42
44.1
M2_43
43.9
M2_44
43.9
M2_45
43.5
M2_46
43.3
M2_47
43.3
M2_48
43.2
M2_49
43.2
M2_50
42.8
M2_51
41.8
M2_52
41.8
M2_53
41.8
M2_54
41.7
M2_55
41.7
M2_56
41.7
M2_57
41.3
M2_58
41.2
M2_59
41.0
M2_60
40.8
M2_61
40.7
M2_62
40.6
M2_63
40.4
M2_64
40.3
M2_65
40.3
M2_66
40.1
M2_67
40.0
M2_68
39.7
M2_69
39.5
M2_70
38.7
M2_71
38.6
M2_72
38.5
M2_73
38.5
M2_74
38.5
M2_75
38.4
M2_76
38.3
M2_77
38.2
M2_78
38.2
M2_79
37.5
M2_80
37.4
M2_81
37.3
M2_82
37.1
M2_83
37.0
M2_84
36.2
M2_85
35.9
M2_86
35.8
M2_87
35.0
M2_88
33.8
M2_89
32.1
M2_90
31.9
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