A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
1.1
nTPM
Schmiedel:
58.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
NK-cell nTPM: 0.7
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.0
P10809_1013
0.3
P10809_1033
0.0
P10809_1052
0.0
P10809_1071
1.8
P10809_1093
0.0
P10809_1103
2.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
Monaco sample
nTPM
NK-cell nTPM: 1.1
Samples: 4
Max nTPM: 2.2
Min nTPM: 0.3
RHH5316_R3683
1.4
RHH5224_R3596
2.2
RHH5253_R3625
0.4
RHH5282_R3654
0.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.1
Schmiedel sample id
TPM
NK-cell TPM: 58.1
Samples: 90
Max TPM: 72.0
Min TPM: 44.9
NK_1
72.0
NK_2
71.5
NK_3
69.1
NK_4
69.0
NK_5
68.2
NK_6
67.5
NK_7
67.0
NK_8
66.7
NK_9
66.0
NK_10
65.8
NK_11
65.4
NK_12
65.3
NK_13
65.2
NK_14
64.8
NK_15
63.9
NK_16
63.7
NK_17
63.7
NK_18
63.6
NK_19
63.2
NK_20
62.9
NK_21
62.8
NK_22
62.1
NK_23
61.9
NK_24
61.6
NK_25
61.5
NK_26
61.4
NK_27
61.3
NK_28
61.2
NK_29
61.2
NK_30
60.9
NK_31
60.4
NK_32
60.2
NK_33
60.1
NK_34
60.1
NK_35
59.9
NK_36
59.2
NK_37
58.9
NK_38
58.8
NK_39
58.8
NK_40
58.5
NK_41
58.5
NK_42
58.5
NK_43
58.4
NK_44
57.9
NK_45
57.9
NK_46
57.8
NK_47
57.8
NK_48
57.6
NK_49
57.3
NK_50
57.3
NK_51
57.2
NK_52
56.9
NK_53
56.9
NK_54
56.7
NK_55
56.6
NK_56
56.4
NK_57
55.8
NK_58
55.7
NK_59
55.7
NK_60
55.6
NK_61
55.5
NK_62
54.9
NK_63
54.8
NK_64
54.4
NK_65
54.3
NK_66
54.2
NK_67
54.1
NK_68
53.7
NK_69
53.7
NK_70
53.6
NK_71
53.4
NK_72
52.9
NK_73
52.9
NK_74
52.8
NK_75
52.7
NK_76
52.6
NK_77
52.2
NK_78
52.1
NK_79
51.6
NK_80
51.3
NK_81
51.0
NK_82
50.2
NK_83
49.8
NK_84
49.5
NK_85
48.9
NK_86
48.2
NK_87
47.7
NK_88
46.9
NK_89
45.1
NK_90
44.9
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