A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.4
nTPM
Monaco:
184.7
nTPM
Schmiedel:
90.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.4
HPA sample
nTPM
Memory B-cell nTPM: 21.7
Samples: 6
Max nTPM: 28.3
Min nTPM: 16.3
P10809_1017
16.9
P10809_1025
25.5
P10809_1044
16.3
P10809_1063
28.3
P10809_1092
19.4
P10809_1105
24.0
Naive B-cell nTPM: 24.4
Samples: 6
Max nTPM: 30.1
Min nTPM: 12.1
P10809_1011
12.1
P10809_1029
23.7
P10809_1048
29.8
P10809_1067
21.1
P10809_1091
29.5
P10809_1104
30.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
184.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 138.0
Samples: 4
Max nTPM: 185.5
Min nTPM: 88.6
RHH5310_R3677
88.6
RHH5218_R3590
185.5
RHH5247_R3619
177.5
RHH5276_R3648
100.4
Naive B-cell nTPM: 154.5
Samples: 4
Max nTPM: 264.7
Min nTPM: 101.0
RHH5308_R3675
101.0
RHH5216_R3588
264.7
RHH5245_R3617
118.6
RHH5274_R3646
133.5
Non-switched memory B-cell nTPM: 121.1
Samples: 4
Max nTPM: 159.9
Min nTPM: 84.0
RHH5309_R3676
88.6
RHH5217_R3589
159.9
RHH5246_R3618
151.8
RHH5275_R3647
84.0
Plasmablast nTPM: 184.7
Samples: 4
Max nTPM: 242.2
Min nTPM: 111.7
RHH5312_R3679
149.9
RHH5220_R3592
242.2
RHH5249_R3621
235.0
RHH5278_R3650
111.7
Switched memory B-cell nTPM: 137.4
Samples: 4
Max nTPM: 209.5
Min nTPM: 72.8
RHH5311_R3678
72.8
RHH5219_R3591
209.5
RHH5248_R3620
146.6
RHH5277_R3649
120.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.0
Schmiedel sample id
TPM
Naive B-cell TPM: 90.0
Samples: 91
Max TPM: 144.8
Min TPM: 60.0
B_CELL_NAIVE_1
144.8
B_CELL_NAIVE_2
133.1
B_CELL_NAIVE_3
132.9
B_CELL_NAIVE_4
124.7
B_CELL_NAIVE_5
123.5
B_CELL_NAIVE_6
123.1
B_CELL_NAIVE_7
115.0
B_CELL_NAIVE_8
114.0
B_CELL_NAIVE_9
112.8
B_CELL_NAIVE_10
110.2
B_CELL_NAIVE_11
109.2
B_CELL_NAIVE_12
109.2
B_CELL_NAIVE_13
108.5
B_CELL_NAIVE_14
106.9
B_CELL_NAIVE_15
105.0
B_CELL_NAIVE_16
104.1
B_CELL_NAIVE_17
101.8
B_CELL_NAIVE_18
100.1
B_CELL_NAIVE_19
99.6
B_CELL_NAIVE_20
99.1
B_CELL_NAIVE_21
99.0
B_CELL_NAIVE_22
97.5
B_CELL_NAIVE_23
97.2
B_CELL_NAIVE_24
96.7
B_CELL_NAIVE_25
96.6
B_CELL_NAIVE_26
95.4
B_CELL_NAIVE_27
95.3
B_CELL_NAIVE_28
94.4
B_CELL_NAIVE_29
94.3
B_CELL_NAIVE_30
94.3
B_CELL_NAIVE_31
93.6
B_CELL_NAIVE_32
93.4
B_CELL_NAIVE_33
92.7
B_CELL_NAIVE_34
92.5
B_CELL_NAIVE_35
92.2
B_CELL_NAIVE_36
92.2
B_CELL_NAIVE_37
92.0
B_CELL_NAIVE_38
91.7
B_CELL_NAIVE_39
91.5
B_CELL_NAIVE_40
90.7
B_CELL_NAIVE_41
90.6
B_CELL_NAIVE_42
89.4
B_CELL_NAIVE_43
89.3
B_CELL_NAIVE_44
88.6
B_CELL_NAIVE_45
88.1
B_CELL_NAIVE_46
88.0
B_CELL_NAIVE_47
87.5
B_CELL_NAIVE_48
87.3
B_CELL_NAIVE_49
87.1
B_CELL_NAIVE_50
87.0
B_CELL_NAIVE_51
86.6
B_CELL_NAIVE_52
86.0
B_CELL_NAIVE_53
85.9
B_CELL_NAIVE_54
85.8
B_CELL_NAIVE_55
85.6
B_CELL_NAIVE_56
84.4
B_CELL_NAIVE_57
84.3
B_CELL_NAIVE_58
84.3
B_CELL_NAIVE_59
83.9
B_CELL_NAIVE_60
83.4
B_CELL_NAIVE_61
83.2
B_CELL_NAIVE_62
83.0
B_CELL_NAIVE_63
82.6
B_CELL_NAIVE_64
82.0
B_CELL_NAIVE_65
81.7
B_CELL_NAIVE_66
81.6
B_CELL_NAIVE_67
80.0
B_CELL_NAIVE_68
79.5
B_CELL_NAIVE_69
79.3
B_CELL_NAIVE_70
78.5
B_CELL_NAIVE_71
78.5
B_CELL_NAIVE_72
77.6
B_CELL_NAIVE_73
77.0
B_CELL_NAIVE_74
76.7
B_CELL_NAIVE_75
76.0
B_CELL_NAIVE_76
75.5
B_CELL_NAIVE_77
75.4
B_CELL_NAIVE_78
74.1
B_CELL_NAIVE_79
73.9
B_CELL_NAIVE_80
73.5
B_CELL_NAIVE_81
73.4
B_CELL_NAIVE_82
70.5
B_CELL_NAIVE_83
68.4
B_CELL_NAIVE_84
66.6
B_CELL_NAIVE_85
66.4
B_CELL_NAIVE_86
65.6
B_CELL_NAIVE_87
64.3
B_CELL_NAIVE_88
63.7
B_CELL_NAIVE_89
63.0
B_CELL_NAIVE_90
61.5
B_CELL_NAIVE_91
60.0
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
