A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.7
nTPM
Monaco:
117.9
nTPM
Schmiedel:
36.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
HPA sample
nTPM
NK-cell nTPM: 30.7
Samples: 6
Max nTPM: 38.8
Min nTPM: 23.8
P10809_1013
23.8
P10809_1033
34.0
P10809_1052
27.4
P10809_1071
38.8
P10809_1093
30.8
P10809_1103
29.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.9
Monaco sample
nTPM
NK-cell nTPM: 117.9
Samples: 4
Max nTPM: 185.7
Min nTPM: 76.6
RHH5316_R3683
76.6
RHH5224_R3596
185.7
RHH5253_R3625
119.5
RHH5282_R3654
89.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.5
Schmiedel sample id
TPM
NK-cell TPM: 36.5
Samples: 90
Max TPM: 63.4
Min TPM: 19.2
NK_1
63.4
NK_2
62.1
NK_3
55.2
NK_4
55.0
NK_5
55.0
NK_6
55.0
NK_7
54.5
NK_8
52.6
NK_9
52.0
NK_10
50.7
NK_11
49.4
NK_12
49.4
NK_13
48.8
NK_14
48.7
NK_15
47.5
NK_16
46.2
NK_17
45.1
NK_18
44.7
NK_19
44.3
NK_20
43.8
NK_21
43.3
NK_22
43.2
NK_23
42.8
NK_24
42.8
NK_25
42.6
NK_26
42.3
NK_27
41.8
NK_28
41.2
NK_29
40.2
NK_30
40.1
NK_31
40.1
NK_32
39.5
NK_33
39.0
NK_34
38.6
NK_35
38.2
NK_36
37.5
NK_37
37.3
NK_38
37.0
NK_39
36.6
NK_40
36.5
NK_41
36.4
NK_42
35.7
NK_43
35.3
NK_44
35.0
NK_45
34.5
NK_46
34.1
NK_47
33.9
NK_48
33.7
NK_49
33.6
NK_50
33.4
NK_51
33.2
NK_52
33.1
NK_53
33.0
NK_54
32.9
NK_55
32.8
NK_56
32.8
NK_57
32.6
NK_58
32.1
NK_59
31.4
NK_60
31.2
NK_61
31.2
NK_62
30.9
NK_63
30.6
NK_64
30.4
NK_65
29.9
NK_66
29.9
NK_67
29.4
NK_68
29.3
NK_69
29.0
NK_70
28.6
NK_71
28.1
NK_72
27.9
NK_73
27.0
NK_74
26.8
NK_75
26.7
NK_76
25.8
NK_77
25.5
NK_78
25.1
NK_79
24.9
NK_80
24.8
NK_81
24.6
NK_82
24.4
NK_83
24.4
NK_84
24.0
NK_85
23.7
NK_86
23.5
NK_87
23.3
NK_88
22.4
NK_89
21.6
NK_90
19.2
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