A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.5
nTPM
Monaco:
181.4
nTPM
Schmiedel:
49.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.5
HPA sample
nTPM
Classical monocyte nTPM: 28.0
Samples: 6
Max nTPM: 36.3
Min nTPM: 13.9
P10809_1003
13.9
P10809_1020
30.7
P10809_1039
26.7
P10809_1058
29.4
P10809_1080
36.3
P10809_1107
31.1
Intermediate monocyte nTPM: 30.8
Samples: 6
Max nTPM: 37.8
Min nTPM: 27.5
P10809_1004
27.5
P10809_1023
27.9
P10809_1042
29.2
P10809_1061
29.0
P10809_1081
33.4
P10809_1108
37.8
Non-classical monocyte nTPM: 32.5
Samples: 5
Max nTPM: 45.7
Min nTPM: 18.4
P10809_1005
18.4
P10809_1053
33.1
P10809_1072
45.7
P10809_1082
32.4
P10809_1109
32.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.4
Monaco sample
nTPM
Classical monocyte nTPM: 167.1
Samples: 4
Max nTPM: 213.9
Min nTPM: 107.6
RHH5313_R3680
107.6
RHH5221_R3593
195.9
RHH5250_R3622
213.9
RHH5279_R3651
150.9
Intermediate monocyte nTPM: 167.3
Samples: 4
Max nTPM: 220.7
Min nTPM: 130.0
RHH5314_R3681
130.0
RHH5222_R3594
159.2
RHH5251_R3623
220.7
RHH5280_R3652
159.3
Non-classical monocyte nTPM: 181.4
Samples: 4
Max nTPM: 235.9
Min nTPM: 112.4
RHH5315_R3682
112.4
RHH5223_R3595
213.2
RHH5252_R3624
235.9
RHH5281_R3653
164.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.3
Schmiedel sample id
TPM
Classical monocyte TPM: 32.5
Samples: 91
Max TPM: 50.0
Min TPM: 21.3
MONOCYTES_1
50.0
MONOCYTES_2
46.8
MONOCYTES_3
45.6
MONOCYTES_4
45.0
MONOCYTES_5
42.5
MONOCYTES_6
40.4
MONOCYTES_7
40.2
MONOCYTES_8
39.9
MONOCYTES_9
39.5
MONOCYTES_10
38.8
MONOCYTES_11
38.6
MONOCYTES_12
38.3
MONOCYTES_13
38.2
MONOCYTES_14
38.1
MONOCYTES_15
38.0
MONOCYTES_16
37.9
MONOCYTES_17
37.7
MONOCYTES_18
37.5
MONOCYTES_19
37.3
MONOCYTES_20
37.2
MONOCYTES_21
37.1
MONOCYTES_22
37.0
MONOCYTES_23
36.8
MONOCYTES_24
36.4
MONOCYTES_25
36.2
MONOCYTES_26
35.6
MONOCYTES_27
35.0
MONOCYTES_28
34.8
MONOCYTES_29
34.6
MONOCYTES_30
34.5
MONOCYTES_31
33.8
MONOCYTES_32
33.7
MONOCYTES_33
33.7
MONOCYTES_34
33.2
MONOCYTES_35
33.1
MONOCYTES_36
33.0
MONOCYTES_37
32.8
MONOCYTES_38
32.7
MONOCYTES_39
32.7
MONOCYTES_40
32.5
MONOCYTES_41
32.4
MONOCYTES_42
32.3
MONOCYTES_43
32.2
MONOCYTES_44
32.0
MONOCYTES_45
31.8
MONOCYTES_46
31.7
MONOCYTES_47
31.6
MONOCYTES_48
31.6
MONOCYTES_49
31.6
MONOCYTES_50
31.4
MONOCYTES_51
31.1
MONOCYTES_52
30.9
MONOCYTES_53
30.6
MONOCYTES_54
30.4
MONOCYTES_55
30.2
MONOCYTES_56
30.1
MONOCYTES_57
30.0
MONOCYTES_58
29.9
MONOCYTES_59
29.9
MONOCYTES_60
29.9
MONOCYTES_61
29.9
MONOCYTES_62
29.8
MONOCYTES_63
29.7
MONOCYTES_64
29.3
MONOCYTES_65
29.0
MONOCYTES_66
28.9
MONOCYTES_67
28.8
MONOCYTES_68
28.8
MONOCYTES_69
28.7
MONOCYTES_70
28.6
MONOCYTES_71
28.3
MONOCYTES_72
27.9
MONOCYTES_73
27.8
MONOCYTES_74
27.7
MONOCYTES_75
27.5
MONOCYTES_76
27.4
MONOCYTES_77
27.3
MONOCYTES_78
27.2
MONOCYTES_79
27.0
MONOCYTES_80
27.0
MONOCYTES_81
26.7
MONOCYTES_82
26.6
MONOCYTES_83
25.6
MONOCYTES_84
25.6
MONOCYTES_85
25.5
MONOCYTES_86
25.4
MONOCYTES_87
25.3
MONOCYTES_88
24.5
MONOCYTES_89
23.7
MONOCYTES_90
23.1
MONOCYTES_91
21.3
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Non-classical monocyte TPM: 49.3
Samples: 90
Max TPM: 73.7
Min TPM: 23.9
M2_1
73.7
M2_2
72.5
M2_3
67.9
M2_4
65.1
M2_5
64.2
M2_6
64.2
M2_7
63.2
M2_8
63.0
M2_9
62.7
M2_10
62.2
M2_11
60.7
M2_12
60.1
M2_13
59.6
M2_14
59.5
M2_15
59.0
M2_16
59.0
M2_17
58.6
M2_18
58.3
M2_19
58.1
M2_20
57.9
M2_21
57.4
M2_22
56.3
M2_23
55.5
M2_24
55.4
M2_25
55.2
M2_26
55.0
M2_27
54.9
M2_28
54.4
M2_29
53.7
M2_30
53.2
M2_31
52.8
M2_32
52.8
M2_33
51.9
M2_34
51.5
M2_35
51.1
M2_36
51.0
M2_37
51.0
M2_38
50.8
M2_39
50.6
M2_40
50.1
M2_41
49.9
M2_42
49.5
M2_43
49.4
M2_44
49.2
M2_45
47.8
M2_46
47.6
M2_47
47.4
M2_48
47.3
M2_49
47.0
M2_50
46.7
M2_51
46.7
M2_52
46.6
M2_53
46.2
M2_54
46.1
M2_55
45.5
M2_56
45.1
M2_57
45.0
M2_58
44.5
M2_59
44.5
M2_60
44.5
M2_61
44.3
M2_62
44.2
M2_63
44.0
M2_64
43.9
M2_65
43.6
M2_66
43.5
M2_67
43.0
M2_68
42.6
M2_69
42.5
M2_70
42.5
M2_71
42.2
M2_72
40.8
M2_73
40.8
M2_74
40.7
M2_75
40.1
M2_76
39.7
M2_77
39.6
M2_78
39.3
M2_79
38.6
M2_80
38.3
M2_81
37.8
M2_82
36.8
M2_83
36.8
M2_84
36.6
M2_85
36.4
M2_86
36.4
M2_87
36.3
M2_88
35.3
M2_89
35.3
M2_90
23.9
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