A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
30.1
nTPM
Schmiedel:
38.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Memory B-cell nTPM: 4.0
Samples: 6
Max nTPM: 8.9
Min nTPM: 0.0
P10809_1017
5.5
P10809_1025
2.3
P10809_1044
0.0
P10809_1063
3.8
P10809_1092
3.7
P10809_1105
8.9
Naive B-cell nTPM: 4.9
Samples: 6
Max nTPM: 8.1
Min nTPM: 3.3
P10809_1011
5.0
P10809_1029
3.6
P10809_1048
8.1
P10809_1067
3.3
P10809_1091
3.7
P10809_1104
5.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 25.0
Samples: 4
Max nTPM: 28.0
Min nTPM: 21.8
RHH5310_R3677
21.8
RHH5218_R3590
28.0
RHH5247_R3619
26.5
RHH5276_R3648
23.5
Naive B-cell nTPM: 23.8
Samples: 4
Max nTPM: 32.9
Min nTPM: 19.1
RHH5308_R3675
19.1
RHH5216_R3588
23.2
RHH5245_R3617
32.9
RHH5274_R3646
20.1
Non-switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 25.7
Min nTPM: 16.7
RHH5309_R3676
19.0
RHH5217_R3589
17.7
RHH5246_R3618
25.7
RHH5275_R3647
16.7
Plasmablast nTPM: 30.1
Samples: 4
Max nTPM: 34.1
Min nTPM: 26.8
RHH5312_R3679
31.2
RHH5220_R3592
34.1
RHH5249_R3621
26.8
RHH5278_R3650
28.2
Switched memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 24.7
Min nTPM: 17.4
RHH5311_R3678
19.1
RHH5219_R3591
20.8
RHH5248_R3620
24.7
RHH5277_R3649
17.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.1
Schmiedel sample id
TPM
Naive B-cell TPM: 38.1
Samples: 91
Max TPM: 102.7
Min TPM: 2.6
B_CELL_NAIVE_1
102.7
B_CELL_NAIVE_2
75.9
B_CELL_NAIVE_3
72.5
B_CELL_NAIVE_4
72.5
B_CELL_NAIVE_5
70.3
B_CELL_NAIVE_6
67.4
B_CELL_NAIVE_7
64.7
B_CELL_NAIVE_8
61.4
B_CELL_NAIVE_9
61.3
B_CELL_NAIVE_10
60.4
B_CELL_NAIVE_11
60.4
B_CELL_NAIVE_12
59.1
B_CELL_NAIVE_13
59.1
B_CELL_NAIVE_14
58.3
B_CELL_NAIVE_15
58.0
B_CELL_NAIVE_16
57.1
B_CELL_NAIVE_17
56.9
B_CELL_NAIVE_18
55.9
B_CELL_NAIVE_19
54.7
B_CELL_NAIVE_20
53.8
B_CELL_NAIVE_21
53.2
B_CELL_NAIVE_22
52.9
B_CELL_NAIVE_23
52.3
B_CELL_NAIVE_24
52.2
B_CELL_NAIVE_25
51.8
B_CELL_NAIVE_26
50.8
B_CELL_NAIVE_27
49.7
B_CELL_NAIVE_28
48.7
B_CELL_NAIVE_29
48.3
B_CELL_NAIVE_30
47.4
B_CELL_NAIVE_31
47.4
B_CELL_NAIVE_32
46.7
B_CELL_NAIVE_33
45.9
B_CELL_NAIVE_34
44.9
B_CELL_NAIVE_35
44.3
B_CELL_NAIVE_36
44.1
B_CELL_NAIVE_37
43.4
B_CELL_NAIVE_38
42.9
B_CELL_NAIVE_39
42.0
B_CELL_NAIVE_40
42.0
B_CELL_NAIVE_41
41.7
B_CELL_NAIVE_42
41.0
B_CELL_NAIVE_43
40.6
B_CELL_NAIVE_44
40.4
B_CELL_NAIVE_45
40.3
B_CELL_NAIVE_46
39.3
B_CELL_NAIVE_47
39.1
B_CELL_NAIVE_48
39.0
B_CELL_NAIVE_49
38.8
B_CELL_NAIVE_50
38.0
B_CELL_NAIVE_51
36.6
B_CELL_NAIVE_52
35.2
B_CELL_NAIVE_53
35.0
B_CELL_NAIVE_54
33.7
B_CELL_NAIVE_55
33.7
B_CELL_NAIVE_56
32.0
B_CELL_NAIVE_57
32.0
B_CELL_NAIVE_58
31.9
B_CELL_NAIVE_59
30.6
B_CELL_NAIVE_60
29.9
B_CELL_NAIVE_61
29.6
B_CELL_NAIVE_62
29.3
B_CELL_NAIVE_63
28.0
B_CELL_NAIVE_64
27.9
B_CELL_NAIVE_65
26.9
B_CELL_NAIVE_66
25.9
B_CELL_NAIVE_67
25.6
B_CELL_NAIVE_68
25.6
B_CELL_NAIVE_69
23.6
B_CELL_NAIVE_70
22.4
B_CELL_NAIVE_71
20.6
B_CELL_NAIVE_72
20.6
B_CELL_NAIVE_73
19.2
B_CELL_NAIVE_74
18.5
B_CELL_NAIVE_75
15.2
B_CELL_NAIVE_76
15.2
B_CELL_NAIVE_77
14.3
B_CELL_NAIVE_78
13.6
B_CELL_NAIVE_79
12.9
B_CELL_NAIVE_80
12.6
B_CELL_NAIVE_81
12.2
B_CELL_NAIVE_82
11.6
B_CELL_NAIVE_83
10.6
B_CELL_NAIVE_84
9.2
B_CELL_NAIVE_85
7.5
B_CELL_NAIVE_86
6.0
B_CELL_NAIVE_87
4.5
B_CELL_NAIVE_88
3.4
B_CELL_NAIVE_89
3.0
B_CELL_NAIVE_90
3.0
B_CELL_NAIVE_91
2.6
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The Human Protein Atlas project is funded
