A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.2
nTPM
Monaco:
23.5
nTPM
Schmiedel:
35.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.2
HPA sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 6
Max nTPM: 7.0
Min nTPM: 2.8
P10809_1003
6.7
P10809_1020
7.0
P10809_1039
2.8
P10809_1058
3.9
P10809_1080
5.8
P10809_1107
4.4
Intermediate monocyte nTPM: 6.1
Samples: 6
Max nTPM: 8.6
Min nTPM: 4.4
P10809_1004
5.8
P10809_1023
6.4
P10809_1042
8.6
P10809_1061
6.9
P10809_1081
4.6
P10809_1108
4.4
Non-classical monocyte nTPM: 6.2
Samples: 5
Max nTPM: 15.4
Min nTPM: 2.3
P10809_1005
4.6
P10809_1053
2.3
P10809_1072
15.4
P10809_1082
3.7
P10809_1109
5.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
Monaco sample
nTPM
Classical monocyte nTPM: 23.0
Samples: 4
Max nTPM: 28.6
Min nTPM: 17.8
RHH5313_R3680
20.7
RHH5221_R3593
25.0
RHH5250_R3622
28.6
RHH5279_R3651
17.8
Intermediate monocyte nTPM: 23.5
Samples: 4
Max nTPM: 30.8
Min nTPM: 18.9
RHH5314_R3681
20.4
RHH5222_R3594
30.8
RHH5251_R3623
18.9
RHH5280_R3652
23.9
Non-classical monocyte nTPM: 22.1
Samples: 4
Max nTPM: 25.4
Min nTPM: 17.2
RHH5315_R3682
20.6
RHH5223_R3595
25.1
RHH5252_R3624
25.4
RHH5281_R3653
17.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
Schmiedel sample id
TPM
Classical monocyte TPM: 35.4
Samples: 91
Max TPM: 76.7
Min TPM: 8.2
MONOCYTES_1
76.7
MONOCYTES_2
72.0
MONOCYTES_3
64.5
MONOCYTES_4
63.8
MONOCYTES_5
62.4
MONOCYTES_6
58.0
MONOCYTES_7
57.5
MONOCYTES_8
56.6
MONOCYTES_9
54.2
MONOCYTES_10
52.4
MONOCYTES_11
51.5
MONOCYTES_12
51.3
MONOCYTES_13
49.7
MONOCYTES_14
49.7
MONOCYTES_15
48.3
MONOCYTES_16
48.2
MONOCYTES_17
48.1
MONOCYTES_18
47.7
MONOCYTES_19
47.7
MONOCYTES_20
47.5
MONOCYTES_21
46.9
MONOCYTES_22
46.8
MONOCYTES_23
45.0
MONOCYTES_24
44.8
MONOCYTES_25
44.8
MONOCYTES_26
44.2
MONOCYTES_27
44.0
MONOCYTES_28
42.3
MONOCYTES_29
42.1
MONOCYTES_30
41.4
MONOCYTES_31
40.7
MONOCYTES_32
40.2
MONOCYTES_33
40.0
MONOCYTES_34
39.5
MONOCYTES_35
39.1
MONOCYTES_36
38.9
MONOCYTES_37
38.9
MONOCYTES_38
38.5
MONOCYTES_39
38.2
MONOCYTES_40
38.1
MONOCYTES_41
38.0
MONOCYTES_42
37.8
MONOCYTES_43
37.5
MONOCYTES_44
37.2
MONOCYTES_45
35.7
MONOCYTES_46
35.2
MONOCYTES_47
35.0
MONOCYTES_48
34.7
MONOCYTES_49
34.7
MONOCYTES_50
34.4
MONOCYTES_51
33.8
MONOCYTES_52
33.2
MONOCYTES_53
32.8
MONOCYTES_54
32.7
MONOCYTES_55
32.6
MONOCYTES_56
31.8
MONOCYTES_57
31.2
MONOCYTES_58
30.3
MONOCYTES_59
30.3
MONOCYTES_60
29.8
MONOCYTES_61
29.8
MONOCYTES_62
29.8
MONOCYTES_63
28.1
MONOCYTES_64
25.9
MONOCYTES_65
25.5
MONOCYTES_66
25.4
MONOCYTES_67
24.2
MONOCYTES_68
22.5
MONOCYTES_69
21.0
MONOCYTES_70
20.5
MONOCYTES_71
20.5
MONOCYTES_72
20.4
MONOCYTES_73
20.3
MONOCYTES_74
20.1
MONOCYTES_75
19.7
MONOCYTES_76
19.1
MONOCYTES_77
18.8
MONOCYTES_78
18.6
MONOCYTES_79
17.5
MONOCYTES_80
16.8
MONOCYTES_81
16.7
MONOCYTES_82
16.6
MONOCYTES_83
16.4
MONOCYTES_84
16.0
MONOCYTES_85
15.6
MONOCYTES_86
15.5
MONOCYTES_87
13.9
MONOCYTES_88
13.6
MONOCYTES_89
10.5
MONOCYTES_90
9.0
MONOCYTES_91
8.2
Show allShow less
Non-classical monocyte TPM: 32.7
Samples: 90
Max TPM: 85.6
Min TPM: 4.1
M2_1
85.6
M2_2
67.1
M2_3
66.9
M2_4
64.5
M2_5
59.5
M2_6
56.9
M2_7
56.8
M2_8
56.4
M2_9
55.2
M2_10
53.7
M2_11
52.0
M2_12
51.5
M2_13
51.3
M2_14
50.2
M2_15
48.4
M2_16
48.1
M2_17
48.0
M2_18
47.4
M2_19
46.5
M2_20
46.2
M2_21
46.0
M2_22
45.2
M2_23
43.9
M2_24
42.9
M2_25
41.1
M2_26
40.3
M2_27
40.0
M2_28
39.8
M2_29
39.7
M2_30
38.7
M2_31
38.7
M2_32
38.5
M2_33
38.2
M2_34
38.2
M2_35
38.0
M2_36
38.0
M2_37
37.9
M2_38
37.4
M2_39
37.1
M2_40
37.0
M2_41
36.5
M2_42
36.5
M2_43
35.8
M2_44
35.1
M2_45
34.4
M2_46
34.4
M2_47
32.5
M2_48
30.5
M2_49
29.6
M2_50
28.7
M2_51
28.1
M2_52
28.1
M2_53
27.7
M2_54
27.4
M2_55
27.2
M2_56
26.0
M2_57
25.8
M2_58
25.2
M2_59
24.3
M2_60
24.0
M2_61
23.9
M2_62
23.4
M2_63
23.0
M2_64
22.8
M2_65
22.7
M2_66
21.3
M2_67
21.2
M2_68
20.0
M2_69
19.4
M2_70
19.3
M2_71
18.2
M2_72
18.1
M2_73
17.6
M2_74
16.3
M2_75
15.8
M2_76
14.9
M2_77
12.9
M2_78
12.6
M2_79
12.0
M2_80
11.2
M2_81
9.9
M2_82
8.8
M2_83
8.4
M2_84
7.8
M2_85
7.3
M2_86
6.1
M2_87
5.7
M2_88
5.1
M2_89
4.5
M2_90
4.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
