A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
24.9
nTPM
Schmiedel:
69.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
NK-cell nTPM: 4.1
Samples: 6
Max nTPM: 6.6
Min nTPM: 0.0
P10809_1013
3.2
P10809_1033
6.6
P10809_1052
6.3
P10809_1071
3.9
P10809_1093
0.0
P10809_1103
4.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Monaco sample
nTPM
NK-cell nTPM: 24.9
Samples: 4
Max nTPM: 30.1
Min nTPM: 21.3
RHH5316_R3683
22.8
RHH5224_R3596
25.4
RHH5253_R3625
30.1
RHH5282_R3654
21.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.0
Schmiedel sample id
TPM
NK-cell TPM: 69.0
Samples: 90
Max TPM: 161.7
Min TPM: 6.9
NK_1
161.7
NK_2
146.8
NK_3
143.3
NK_4
142.8
NK_5
139.7
NK_6
139.7
NK_7
127.4
NK_8
126.2
NK_9
122.7
NK_10
120.2
NK_11
117.5
NK_12
112.5
NK_13
106.7
NK_14
105.7
NK_15
104.5
NK_16
102.8
NK_17
101.2
NK_18
96.9
NK_19
95.0
NK_20
93.7
NK_21
92.2
NK_22
90.2
NK_23
89.1
NK_24
88.6
NK_25
84.7
NK_26
83.4
NK_27
82.2
NK_28
82.1
NK_29
80.7
NK_30
80.3
NK_31
79.8
NK_32
79.1
NK_33
78.5
NK_34
78.2
NK_35
76.8
NK_36
76.5
NK_37
75.5
NK_38
74.6
NK_39
73.1
NK_40
72.9
NK_41
72.3
NK_42
71.3
NK_43
70.3
NK_44
69.6
NK_45
68.6
NK_46
68.3
NK_47
67.6
NK_48
66.0
NK_49
65.6
NK_50
63.1
NK_51
60.4
NK_52
59.1
NK_53
58.8
NK_54
58.7
NK_55
57.2
NK_56
56.0
NK_57
55.8
NK_58
55.1
NK_59
53.9
NK_60
53.7
NK_61
53.7
NK_62
51.4
NK_63
49.3
NK_64
47.3
NK_65
47.2
NK_66
46.5
NK_67
45.5
NK_68
43.1
NK_69
42.6
NK_70
42.3
NK_71
40.7
NK_72
37.8
NK_73
35.8
NK_74
32.1
NK_75
30.9
NK_76
29.5
NK_77
28.2
NK_78
27.9
NK_79
26.7
NK_80
26.1
NK_81
23.2
NK_82
22.8
NK_83
19.1
NK_84
18.1
NK_85
17.9
NK_86
15.2
NK_87
11.1
NK_88
8.3
NK_89
8.1
NK_90
6.9
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