A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.2
nTPM
Monaco:
165.6
nTPM
Schmiedel:
72.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
HPA sample
nTPM
Memory B-cell nTPM: 7.3
Samples: 6
Max nTPM: 9.0
Min nTPM: 4.2
P10809_1017
9.0
P10809_1025
8.7
P10809_1044
8.8
P10809_1063
6.8
P10809_1092
4.2
P10809_1105
6.0
Naive B-cell nTPM: 8.2
Samples: 6
Max nTPM: 15.2
Min nTPM: 2.0
P10809_1011
15.2
P10809_1029
9.4
P10809_1048
2.0
P10809_1067
6.1
P10809_1091
6.7
P10809_1104
10.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 65.3
Samples: 4
Max nTPM: 100.0
Min nTPM: 24.7
RHH5310_R3677
24.7
RHH5218_R3590
68.3
RHH5247_R3619
100.0
RHH5276_R3648
68.3
Naive B-cell nTPM: 165.6
Samples: 4
Max nTPM: 267.7
Min nTPM: 114.2
RHH5308_R3675
114.2
RHH5216_R3588
166.4
RHH5245_R3617
267.7
RHH5274_R3646
114.3
Non-switched memory B-cell nTPM: 65.5
Samples: 4
Max nTPM: 80.4
Min nTPM: 51.9
RHH5309_R3676
63.4
RHH5217_R3589
66.3
RHH5246_R3618
51.9
RHH5275_R3647
80.4
Plasmablast nTPM: 46.6
Samples: 4
Max nTPM: 58.8
Min nTPM: 40.5
RHH5312_R3679
44.6
RHH5220_R3592
42.5
RHH5249_R3621
58.8
RHH5278_R3650
40.5
Switched memory B-cell nTPM: 46.2
Samples: 4
Max nTPM: 57.8
Min nTPM: 24.7
RHH5311_R3678
24.7
RHH5219_R3591
44.7
RHH5248_R3620
57.5
RHH5277_R3649
57.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.8
Schmiedel sample id
TPM
Naive B-cell TPM: 72.8
Samples: 91
Max TPM: 92.1
Min TPM: 55.9
B_CELL_NAIVE_1
92.1
B_CELL_NAIVE_2
91.2
B_CELL_NAIVE_3
89.1
B_CELL_NAIVE_4
88.9
B_CELL_NAIVE_5
88.6
B_CELL_NAIVE_6
86.7
B_CELL_NAIVE_7
86.6
B_CELL_NAIVE_8
86.2
B_CELL_NAIVE_9
85.5
B_CELL_NAIVE_10
85.3
B_CELL_NAIVE_11
85.1
B_CELL_NAIVE_12
84.0
B_CELL_NAIVE_13
83.1
B_CELL_NAIVE_14
81.9
B_CELL_NAIVE_15
80.9
B_CELL_NAIVE_16
80.3
B_CELL_NAIVE_17
80.1
B_CELL_NAIVE_18
80.0
B_CELL_NAIVE_19
80.0
B_CELL_NAIVE_20
79.5
B_CELL_NAIVE_21
79.2
B_CELL_NAIVE_22
78.9
B_CELL_NAIVE_23
78.7
B_CELL_NAIVE_24
78.3
B_CELL_NAIVE_25
78.0
B_CELL_NAIVE_26
77.9
B_CELL_NAIVE_27
77.5
B_CELL_NAIVE_28
77.3
B_CELL_NAIVE_29
77.3
B_CELL_NAIVE_30
76.9
B_CELL_NAIVE_31
76.5
B_CELL_NAIVE_32
76.2
B_CELL_NAIVE_33
76.1
B_CELL_NAIVE_34
75.7
B_CELL_NAIVE_35
75.5
B_CELL_NAIVE_36
75.4
B_CELL_NAIVE_37
75.1
B_CELL_NAIVE_38
75.1
B_CELL_NAIVE_39
74.9
B_CELL_NAIVE_40
74.5
B_CELL_NAIVE_41
73.8
B_CELL_NAIVE_42
73.5
B_CELL_NAIVE_43
73.3
B_CELL_NAIVE_44
72.6
B_CELL_NAIVE_45
72.0
B_CELL_NAIVE_46
71.8
B_CELL_NAIVE_47
71.8
B_CELL_NAIVE_48
71.8
B_CELL_NAIVE_49
71.8
B_CELL_NAIVE_50
71.5
B_CELL_NAIVE_51
71.4
B_CELL_NAIVE_52
71.3
B_CELL_NAIVE_53
71.1
B_CELL_NAIVE_54
70.7
B_CELL_NAIVE_55
70.6
B_CELL_NAIVE_56
70.5
B_CELL_NAIVE_57
70.4
B_CELL_NAIVE_58
69.6
B_CELL_NAIVE_59
69.6
B_CELL_NAIVE_60
69.6
B_CELL_NAIVE_61
69.4
B_CELL_NAIVE_62
69.3
B_CELL_NAIVE_63
68.3
B_CELL_NAIVE_64
67.8
B_CELL_NAIVE_65
67.0
B_CELL_NAIVE_66
66.6
B_CELL_NAIVE_67
66.5
B_CELL_NAIVE_68
66.0
B_CELL_NAIVE_69
65.8
B_CELL_NAIVE_70
65.8
B_CELL_NAIVE_71
65.0
B_CELL_NAIVE_72
64.9
B_CELL_NAIVE_73
64.7
B_CELL_NAIVE_74
64.5
B_CELL_NAIVE_75
64.4
B_CELL_NAIVE_76
64.4
B_CELL_NAIVE_77
64.3
B_CELL_NAIVE_78
63.8
B_CELL_NAIVE_79
63.5
B_CELL_NAIVE_80
63.5
B_CELL_NAIVE_81
61.6
B_CELL_NAIVE_82
60.8
B_CELL_NAIVE_83
60.3
B_CELL_NAIVE_84
59.7
B_CELL_NAIVE_85
59.5
B_CELL_NAIVE_86
59.3
B_CELL_NAIVE_87
58.8
B_CELL_NAIVE_88
58.8
B_CELL_NAIVE_89
57.5
B_CELL_NAIVE_90
56.8
B_CELL_NAIVE_91
55.9
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The Human Protein Atlas project is funded
