A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.2
nTPM
Monaco:
58.5
nTPM
Schmiedel:
34.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.2
HPA sample
nTPM
Classical monocyte nTPM: 3.5
Samples: 6
Max nTPM: 5.7
Min nTPM: 2.5
P10809_1003
4.3
P10809_1020
5.7
P10809_1039
2.8
P10809_1058
2.6
P10809_1080
2.5
P10809_1107
3.4
Intermediate monocyte nTPM: 5.3
Samples: 6
Max nTPM: 8.3
Min nTPM: 1.0
P10809_1004
7.6
P10809_1023
5.0
P10809_1042
8.3
P10809_1061
1.0
P10809_1081
4.1
P10809_1108
5.7
Non-classical monocyte nTPM: 11.2
Samples: 5
Max nTPM: 27.3
Min nTPM: 5.6
P10809_1005
6.8
P10809_1053
10.0
P10809_1072
27.3
P10809_1082
5.6
P10809_1109
6.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.5
Monaco sample
nTPM
Classical monocyte nTPM: 49.5
Samples: 4
Max nTPM: 54.3
Min nTPM: 39.7
RHH5313_R3680
39.7
RHH5221_R3593
51.3
RHH5250_R3622
54.3
RHH5279_R3651
52.8
Intermediate monocyte nTPM: 58.5
Samples: 4
Max nTPM: 70.5
Min nTPM: 42.7
RHH5314_R3681
57.6
RHH5222_R3594
63.3
RHH5251_R3623
42.7
RHH5280_R3652
70.5
Non-classical monocyte nTPM: 57.6
Samples: 4
Max nTPM: 84.1
Min nTPM: 37.2
RHH5315_R3682
59.7
RHH5223_R3595
84.1
RHH5252_R3624
49.5
RHH5281_R3653
37.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.1
Schmiedel sample id
TPM
Classical monocyte TPM: 18.1
Samples: 91
Max TPM: 25.1
Min TPM: 13.0
MONOCYTES_1
25.1
MONOCYTES_2
25.0
MONOCYTES_3
23.9
MONOCYTES_4
22.9
MONOCYTES_5
22.8
MONOCYTES_6
22.6
MONOCYTES_7
22.5
MONOCYTES_8
22.4
MONOCYTES_9
22.3
MONOCYTES_10
22.1
MONOCYTES_11
22.0
MONOCYTES_12
21.8
MONOCYTES_13
21.8
MONOCYTES_14
21.6
MONOCYTES_15
21.5
MONOCYTES_16
21.3
MONOCYTES_17
21.3
MONOCYTES_18
21.0
MONOCYTES_19
20.9
MONOCYTES_20
20.9
MONOCYTES_21
20.3
MONOCYTES_22
20.2
MONOCYTES_23
20.0
MONOCYTES_24
19.9
MONOCYTES_25
19.2
MONOCYTES_26
19.1
MONOCYTES_27
18.9
MONOCYTES_28
18.9
MONOCYTES_29
18.8
MONOCYTES_30
18.7
MONOCYTES_31
18.4
MONOCYTES_32
18.4
MONOCYTES_33
18.3
MONOCYTES_34
18.3
MONOCYTES_35
18.3
MONOCYTES_36
18.3
MONOCYTES_37
18.2
MONOCYTES_38
18.2
MONOCYTES_39
18.1
MONOCYTES_40
18.1
MONOCYTES_41
18.0
MONOCYTES_42
18.0
MONOCYTES_43
18.0
MONOCYTES_44
17.8
MONOCYTES_45
17.8
MONOCYTES_46
17.8
MONOCYTES_47
17.8
MONOCYTES_48
17.6
MONOCYTES_49
17.5
MONOCYTES_50
17.5
MONOCYTES_51
17.4
MONOCYTES_52
17.3
MONOCYTES_53
17.2
MONOCYTES_54
17.1
MONOCYTES_55
17.1
MONOCYTES_56
17.1
MONOCYTES_57
17.0
MONOCYTES_58
16.9
MONOCYTES_59
16.9
MONOCYTES_60
16.8
MONOCYTES_61
16.6
MONOCYTES_62
16.6
MONOCYTES_63
16.6
MONOCYTES_64
16.5
MONOCYTES_65
16.4
MONOCYTES_66
16.2
MONOCYTES_67
16.0
MONOCYTES_68
16.0
MONOCYTES_69
16.0
MONOCYTES_70
15.9
MONOCYTES_71
15.7
MONOCYTES_72
15.6
MONOCYTES_73
15.6
MONOCYTES_74
15.5
MONOCYTES_75
15.5
MONOCYTES_76
15.4
MONOCYTES_77
15.4
MONOCYTES_78
15.4
MONOCYTES_79
15.3
MONOCYTES_80
15.3
MONOCYTES_81
15.2
MONOCYTES_82
14.9
MONOCYTES_83
14.9
MONOCYTES_84
14.5
MONOCYTES_85
14.3
MONOCYTES_86
14.3
MONOCYTES_87
14.2
MONOCYTES_88
14.0
MONOCYTES_89
13.3
MONOCYTES_90
13.0
MONOCYTES_91
13.0
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Non-classical monocyte TPM: 34.1
Samples: 90
Max TPM: 47.8
Min TPM: 19.2
M2_1
47.8
M2_2
47.4
M2_3
46.4
M2_4
43.2
M2_5
42.8
M2_6
42.1
M2_7
41.5
M2_8
41.2
M2_9
41.1
M2_10
41.0
M2_11
40.8
M2_12
40.6
M2_13
39.4
M2_14
39.3
M2_15
38.8
M2_16
38.5
M2_17
38.4
M2_18
38.2
M2_19
37.9
M2_20
37.9
M2_21
37.9
M2_22
37.9
M2_23
37.6
M2_24
37.4
M2_25
37.3
M2_26
36.7
M2_27
36.6
M2_28
36.5
M2_29
36.1
M2_30
36.0
M2_31
36.0
M2_32
35.9
M2_33
35.7
M2_34
35.5
M2_35
34.8
M2_36
34.7
M2_37
34.5
M2_38
34.3
M2_39
34.2
M2_40
33.8
M2_41
33.8
M2_42
33.7
M2_43
33.7
M2_44
33.6
M2_45
33.5
M2_46
33.5
M2_47
33.5
M2_48
33.2
M2_49
32.9
M2_50
32.8
M2_51
32.8
M2_52
32.4
M2_53
32.4
M2_54
32.3
M2_55
32.3
M2_56
31.9
M2_57
31.8
M2_58
31.7
M2_59
31.7
M2_60
31.6
M2_61
31.4
M2_62
31.3
M2_63
31.2
M2_64
31.2
M2_65
31.1
M2_66
31.1
M2_67
30.7
M2_68
30.7
M2_69
30.3
M2_70
30.2
M2_71
30.1
M2_72
29.5
M2_73
29.5
M2_74
29.4
M2_75
29.3
M2_76
29.2
M2_77
29.0
M2_78
28.8
M2_79
28.6
M2_80
28.6
M2_81
28.4
M2_82
28.4
M2_83
28.0
M2_84
27.8
M2_85
27.5
M2_86
27.2
M2_87
26.9
M2_88
26.8
M2_89
26.0
M2_90
19.2
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