A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.5
nTPM
Monaco:
215.3
nTPM
Schmiedel:
110.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
HPA sample
nTPM
NK-cell nTPM: 20.5
Samples: 6
Max nTPM: 36.0
Min nTPM: 4.5
P10809_1013
24.5
P10809_1033
16.6
P10809_1052
16.4
P10809_1071
25.2
P10809_1093
4.5
P10809_1103
36.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
215.3
Monaco sample
nTPM
NK-cell nTPM: 215.3
Samples: 4
Max nTPM: 267.0
Min nTPM: 180.3
RHH5316_R3683
208.5
RHH5224_R3596
267.0
RHH5253_R3625
205.5
RHH5282_R3654
180.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.3
Schmiedel sample id
TPM
NK-cell TPM: 110.4
Samples: 90
Max TPM: 145.2
Min TPM: 57.3
NK_1
145.2
NK_2
145.0
NK_3
144.6
NK_4
143.5
NK_5
140.2
NK_6
135.3
NK_7
132.8
NK_8
129.9
NK_9
129.0
NK_10
128.7
NK_11
128.4
NK_12
128.0
NK_13
126.6
NK_14
126.3
NK_15
125.9
NK_16
125.7
NK_17
122.8
NK_18
121.7
NK_19
121.2
NK_20
120.0
NK_21
119.6
NK_22
117.7
NK_23
117.4
NK_24
115.4
NK_25
115.0
NK_26
115.0
NK_27
114.8
NK_28
114.6
NK_29
113.6
NK_30
113.0
NK_31
112.6
NK_32
112.4
NK_33
111.4
NK_34
111.2
NK_35
111.0
NK_36
110.9
NK_37
110.6
NK_38
109.9
NK_39
109.7
NK_40
109.4
NK_41
109.4
NK_42
109.4
NK_43
108.9
NK_44
108.6
NK_45
108.5
NK_46
108.3
NK_47
108.1
NK_48
107.8
NK_49
107.4
NK_50
107.2
NK_51
106.5
NK_52
106.5
NK_53
106.4
NK_54
106.4
NK_55
106.2
NK_56
105.4
NK_57
105.4
NK_58
105.1
NK_59
104.2
NK_60
104.2
NK_61
104.1
NK_62
104.1
NK_63
103.8
NK_64
103.7
NK_65
103.6
NK_66
103.3
NK_67
102.9
NK_68
102.0
NK_69
102.0
NK_70
101.6
NK_71
100.5
NK_72
100.2
NK_73
99.5
NK_74
99.1
NK_75
98.7
NK_76
97.9
NK_77
97.6
NK_78
97.0
NK_79
97.0
NK_80
96.4
NK_81
95.9
NK_82
95.4
NK_83
94.6
NK_84
92.9
NK_85
91.8
NK_86
91.7
NK_87
90.9
NK_88
90.7
NK_89
89.5
NK_90
57.3
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