MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.0 nTPM
HPA Brain:125.8 nTPM
GTEx:48.0 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:1.6 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.3
2586 Male, age 75, left hemisphere 164.4
2828 Female, age 72, unknown 155.5
2666 Male, age 74, left hemisphere 124.4
1827 Male, age 72, unknown 101.3
2019 Male, age 18, unknown 98.4
2411 Female, age 72, unknown 84.2
1833 Male, age 53, unknown 81.3
1830 Male, age 51, unknown 77.0
1870 Female, age 42, unknown 65.3
2219 Male, age 76, both hemispheres 61.4
Dorsal raphe nucleus
nTPM: 90.8
2016 Female, age 72, unknown 104.4
1828 Male, age 53, unknown 102.3
2298 Female, age 72, unknown 85.6
2750 Male, age 76, both hemispheres 82.1
2047 Male, age 72, unknown 79.5
Inferior colliculus
nTPM: 77.5
1848 Female, age 42, unknown 85.2
1890 Male, age 53, unknown 81.0
2849 Male, age 72, unknown 77.6
2097 Female, age 72, unknown 66.1
Median raphe nucleus
nTPM: 80.6
2220 Male, age 76, midline 80.6
Periaquaductal grey, anterior
nTPM: 93.7
2502 Female, age 75, unknown 112.7
1795 Male, age 51, unknown 99.8
1947 Male, age 18, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 106.6
1840 Male, age 53, unknown 114.2
2850 Male, age 76, both hemispheres 108.1
2464 Female, age 72, unknown 106.2
1831 Male, age 72, unknown 98.0
Periaquaductal grey, lateral
nTPM: 105.6
2140 Male, age 76, both hemispheres 130.7
2053 Male, age 18, unknown 107.6
2272 Male, age 74, both hemispheres 78.5
Pretectal area
nTPM: 120.8
2007 Male, age 72, unknown 179.9
1816 Male, age 51, unknown 168.8
1944 Female, age 72, unknown 156.3
1817 Female, age 42, unknown 154.8
1815 Male, age 53, unknown 141.3
2316 Male, age 76, right hemisphere 112.0
2667 Female, age 75, unknown 95.3
2825 Male, age 18, unknown 85.7
2224 Female, age 72, unknown 83.1
2407 Male, age 75, both hemispheres 77.7
2273 Male, age 74, both hemispheres 73.9
Red nucleus
nTPM: 95.5
2588 Male, age 74, left hemisphere 124.4
2503 Female, age 72, unknown 118.0
2823 Male, age 76, right hemisphere 115.0
2785 Male, age 18, unknown 105.6
2725 Female, age 75, unknown 98.3
1865 Male, age 51, unknown 91.3
1821 Female, age 72, unknown 88.2
1904 Male, age 53, unknown 83.9
1954 Female, age 42, unknown 81.7
2769 Male, age 72, unknown 81.2
2227 Male, age 72, unknown 79.3
2584 Male, age 75, left hemisphere 79.3
Substantia nigra
nTPM: 125.8
2699 Male, age 18, unknown 156.7
2665 Male, age 74, both hemispheres 152.3
1916 Female, age 42, unknown 151.9
1851 Male, age 51, unknown 135.7
2590 Female, age 75, unknown 124.7
2409 Female, age 72, unknown 124.4
1889 Female, age 72, unknown 114.2
2583 Male, age 75, right hemisphere 109.0
2241 Male, age 72, unknown 101.5
1941 Male, age 53, unknown 88.2
Superior colliculus
nTPM: 104.8
2087 Female, age 72, unknown 138.6
1995 Male, age 72, unknown 128.0
2261 Male, age 18, unknown 121.8
1796 Male, age 53, unknown 117.2
2664 Male, age 75, both hemispheres 109.3
2668 Female, age 75, unknown 95.9
1913 Female, age 42, unknown 95.2
2587 Male, age 74, left hemisphere 90.3
1839 Male, age 51, unknown 78.7
1895 Male, age 76, right hemisphere 72.6
Ventral tegmental area
nTPM: 95.2
2410 Female, age 72, unknown 108.3
2218 Male, age 76, both hemispheres 101.2
1915 Female, age 42, unknown 100.4
2021 Male, age 53, unknown 98.3
1942 Male, age 51, unknown 90.6
2223 Female, age 72, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.0
Samples: 183

Max nTPM: 201.4
Min nTPM: 5.8
Std nTPM: 28.9
Median nTPM: 42.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 201.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 175.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 145.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 133.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 127.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 122.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 108.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 107.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 102.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 99.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 94.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.4
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.2
Sample A Female 26.9
Sample B Female 25.6
Sample C Male 22.9
Sample D Male 22.2
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 80.9
Min nTPM: 10.2
Sample A Female 40.4
Sample B Female 21.1
Sample C Male 80.9
Sample D Male 10.2
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 24.6
Min nTPM: 14.6
Sample B Female 24.6
Sample C Male 14.6
Sample D Male 15.4
Superior colliculi
nTPM: 40.9
Samples: 4

Max nTPM: 86.2
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 30.5
Sample C Male 86.2
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.3
Sample A Male 1.7
Sample B Male 2.0
Sample C Female 1.3
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71210520 Antisense, RP_050810_04_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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