On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.4
nTPM
HPA Brain:
91.2
nTPM
GTEx:
15.4
nTPM
FANTOM5:
69.2
Scaled Tags Per Million
Macaque:
11.5
nTPM
Mouse:
4.5
nTPM
Rat:
5.3
nTPM
Pig:
34.3
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
5244
Sample
Intensity
Spinal cord_01
4671
Spinal cord_02
5528
Spinal cord_03
8536
Spinal cord_04
11329
Spinal cord_05
4357
Spinal cord_06
3152
Spinal cord_07
4960
Spinal cord_08
6627
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 53.3
2818
Female, age 79, both hemispheres
66.1
2819
Male, age 47, both hemispheres
54.6
2734
Male, age 80, both hemispheres
52.6
2193
Male, age 75, both hemispheres
39.9
Cervical spinal cord, central gray nTPM: 73.4
2048
Male, age 55, midline
93.3
2565
Male, age 75, midline
78.6
1981
Female, age 72, midline
69.7
2194
Female, age 79, both hemispheres
64.0
2816
Male, age 47, midline
61.5
Cervical spinal cord, dorsal horn nTPM: 62.5
2173
Female, age 72, unknown
78.1
2721
Male, age 90, both hemispheres
77.5
1877
Male, age 55, unknown
60.8
2296
Male, age 66, both hemispheres
55.4
2069
Male, age 47, both hemispheres
52.7
2297
Male, age 75, both hemispheres
50.4
Cervical spinal cord, ventral horn nTPM: 91.2
2809
Male, age 90, both hemispheres
123.9
2295
Male, age 66, both hemispheres
103.4
2480
Male, age 75, both hemispheres
94.6
2098
Female, age 72, unknown
84.0
2820
Female, age 79, both hemispheres
71.9
2068
Male, age 55, unknown
69.3
Dorsal funiculus (white matter) nTPM: 63.9
2064
Female, age 79, both hemispheres
88.0
2817
Male, age 47, both hemispheres
79.4
2812
Male, age 66, both hemispheres
76.5
2128
Male, age 75, both hemispheres
39.0
2810
Male, age 90, both hemispheres
36.9
Lateral funiculus (white matter) nTPM: 37.8
2094
Female, age 79, both hemispheres
66.2
2099
Male, age 90, both hemispheres
32.3
2192
Male, age 75, both hemispheres
26.6
2294
Male, age 66, both hemispheres
26.1
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.4
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 15.4
Samples: 204
Max nTPM: 64.4
Min nTPM: 4.2
Std nTPM: 8.9
Median nTPM: 12.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
64.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
56.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
55.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
49.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
45.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
39.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
37.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
35.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
35.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
34.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
33.1
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
32.3
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
31.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
27.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
27.4
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
26.8
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
26.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
25.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
24.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
24.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
23.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
23.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
22.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
22.6
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
22.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
22.4
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
22.4
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
22.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
22.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
21.7
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
21.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
20.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
20.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
20.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
20.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
20.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
20.1
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
19.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
19.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
19.2
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
19.2
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
19.1
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
19.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
19.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
19.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
18.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
18.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
18.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
18.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
18.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
18.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
18.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
18.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
18.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
18.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
18.2
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
17.8
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
17.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
17.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
17.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
17.2
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
16.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
16.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
16.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
16.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
16.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
16.4
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
16.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
16.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
16.0
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
16.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
16.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
15.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
15.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
15.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
15.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
15.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
15.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
15.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
14.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
14.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
14.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
14.2
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
14.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
14.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
13.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
13.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
13.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
13.7
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
13.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
13.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
13.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
13.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
13.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
13.2
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
13.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
13.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
13.1
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
13.1
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
13.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
13.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
13.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
12.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
12.8
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
12.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
12.7
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
12.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
12.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
12.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
12.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
12.5
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
12.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
12.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
12.3
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
12.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
12.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
12.0
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
12.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
11.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
11.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
11.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
11.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
11.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
11.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
11.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
11.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
11.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
11.5
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
11.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
11.4
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
11.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
11.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
11.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
11.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
11.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
11.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
11.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
11.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
11.0
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
10.9
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
10.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
10.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
10.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
10.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
10.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
10.6
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
10.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
10.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
10.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
10.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
10.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
10.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
10.0
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
9.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
9.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
9.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
9.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
9.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
9.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
9.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
9.5
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
9.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
9.4
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
9.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
9.2
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
9.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
9.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
9.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
9.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
9.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
9.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
8.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
8.9
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
8.8
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
8.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
8.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
8.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
8.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
8.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
8.5
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
8.4
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
8.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
8.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
8.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
8.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
8.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
7.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
7.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
7.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
7.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
7.0
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
7.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
7.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
6.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
6.7
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
6.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
6.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
6.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
6.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
6.2
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
6.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
5.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
5.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
4.2
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.5
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 10.6
Samples: 2
Max nTPM: 10.9
Min nTPM: 10.3
Sample A
10.9
Sample B
10.3
Ventral spinal cord nTPM: 11.5
Samples: 1
Max nTPM: 11.5
Min nTPM: 11.5
Sample A
11.5
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.3
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 23.7
Samples: 4
Max nTPM: 25.3
Min nTPM: 20.9
Sample A
Female
25.3
Sample B
Female
23.3
Sample C
Male
20.9
Sample D
Male
25.2
Ventral spinal cord nTPM: 34.4
Samples: 4
Max nTPM: 39.1
Min nTPM: 27.3
Sample A
Female
38.6
Sample B
Female
32.4
Sample C
Male
27.3
Sample D
Male
39.1
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 4.5
Samples: 4
Max nTPM: 5.6
Min nTPM: 3.7
Sample A
3.8
Sample B
5.0
Sample C
5.6
Sample D
3.7
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 5.3
Samples: 4
Max nTPM: 6.0
Min nTPM: 4.4
Sample A
5.7
Sample A
6.0
Sample A
5.1
Sample A
4.4
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The Human Protein Atlas project is funded
