On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
521.2
nTPM
HPA Brain:
553.7
nTPM
GTEx:
521.2
nTPM
FANTOM5:
500.3
Scaled Tags Per Million
Macaque:
34.4
nTPM
Mouse:
610.7
nTPM
Rat:
494.9
nTPM
Pig:
498.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
553.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 358.5
2411
Female, age 72, unknown
448.1
1870
Female, age 42, unknown
388.5
2586
Male, age 75, left hemisphere
386.2
1827
Male, age 72, unknown
374.0
2828
Female, age 72, unknown
364.9
2019
Male, age 18, unknown
338.2
1833
Male, age 53, unknown
333.7
2666
Male, age 74, left hemisphere
325.0
2219
Male, age 76, both hemispheres
322.9
1830
Male, age 51, unknown
303.9
Dorsal raphe nucleus nTPM: 553.7
2298
Female, age 72, unknown
739.4
2047
Male, age 72, unknown
614.0
1828
Male, age 53, unknown
522.9
2016
Female, age 72, unknown
470.4
2750
Male, age 76, both hemispheres
421.7
Inferior colliculus nTPM: 468.8
2097
Female, age 72, unknown
622.9
1890
Male, age 53, unknown
531.3
1848
Female, age 42, unknown
394.8
2849
Male, age 72, unknown
326.4
Median raphe nucleus nTPM: 506.1
2220
Male, age 76, midline
506.1
Periaquaductal grey, anterior nTPM: 412.6
1947
Male, age 18, unknown
438.9
1795
Male, age 51, unknown
433.4
2502
Female, age 75, unknown
365.3
Periaquaductal grey, dorsal nTPM: 395.8
2850
Male, age 76, both hemispheres
467.9
1840
Male, age 53, unknown
406.9
2464
Female, age 72, unknown
364.0
1831
Male, age 72, unknown
344.3
Periaquaductal grey, lateral nTPM: 409.3
2272
Male, age 74, both hemispheres
472.0
2140
Male, age 76, both hemispheres
396.1
2053
Male, age 18, unknown
359.7
Pretectal area nTPM: 397.1
2667
Female, age 75, unknown
510.5
2273
Male, age 74, both hemispheres
509.4
2224
Female, age 72, unknown
484.7
1817
Female, age 42, unknown
419.7
1944
Female, age 72, unknown
409.8
1816
Male, age 51, unknown
389.8
2825
Male, age 18, unknown
370.5
2007
Male, age 72, unknown
368.3
2316
Male, age 76, right hemisphere
320.1
1815
Male, age 53, unknown
311.5
2407
Male, age 75, both hemispheres
274.2
Red nucleus nTPM: 364.8
1821
Female, age 72, unknown
480.0
2725
Female, age 75, unknown
429.2
1954
Female, age 42, unknown
422.2
2227
Male, age 72, unknown
392.7
2769
Male, age 72, unknown
390.4
2503
Female, age 72, unknown
375.5
1865
Male, age 51, unknown
359.2
1904
Male, age 53, unknown
356.4
2823
Male, age 76, right hemisphere
336.4
2785
Male, age 18, unknown
335.2
2584
Male, age 75, left hemisphere
252.2
2588
Male, age 74, left hemisphere
247.8
Substantia nigra nTPM: 457.9
1916
Female, age 42, unknown
689.3
1941
Male, age 53, unknown
544.5
2699
Male, age 18, unknown
502.6
1851
Male, age 51, unknown
500.9
2241
Male, age 72, unknown
500.5
1889
Female, age 72, unknown
443.8
2409
Female, age 72, unknown
379.6
2665
Male, age 74, both hemispheres
366.1
2590
Female, age 75, unknown
327.3
2583
Male, age 75, right hemisphere
324.3
Superior colliculus nTPM: 347.1
2087
Female, age 72, unknown
394.6
2261
Male, age 18, unknown
384.7
1796
Male, age 53, unknown
375.6
1995
Male, age 72, unknown
365.5
1913
Female, age 42, unknown
357.1
2587
Male, age 74, left hemisphere
339.1
2668
Female, age 75, unknown
337.7
1839
Male, age 51, unknown
328.4
2664
Male, age 75, both hemispheres
306.7
1895
Male, age 76, right hemisphere
281.9
Ventral tegmental area nTPM: 465.5
1915
Female, age 42, unknown
533.9
1942
Male, age 51, unknown
482.0
2410
Female, age 72, unknown
469.7
2223
Female, age 72, unknown
459.6
2218
Male, age 76, both hemispheres
445.1
2021
Male, age 53, unknown
402.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
521.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 521.2
Samples: 183
Max nTPM: 1218.0
Min nTPM: 205.6
Std nTPM: 158.7
Median nTPM: 506.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1218.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1084.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1020.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1015.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
928.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
906.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
882.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
789.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
778.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
774.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
760.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
756.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
748.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
738.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
728.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
720.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
717.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
714.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
705.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
704.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
692.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
687.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
685.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
683.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
680.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
673.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
662.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
660.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
658.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
652.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
644.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
642.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
640.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
639.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
637.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
634.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
633.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
630.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
629.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
627.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
622.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
620.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
615.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
615.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
611.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
611.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
601.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
599.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
594.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
593.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
593.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
593.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
593.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
589.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
582.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
582.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
582.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
580.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
575.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
571.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
568.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
567.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
562.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
559.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
558.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
556.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
556.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
550.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
549.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
549.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
545.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
542.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
541.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
540.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
539.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
536.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
529.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
528.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
526.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
525.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
525.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
525.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
524.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
521.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
520.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
519.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
517.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
513.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
509.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
507.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
506.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
506.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
506.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
505.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
500.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
499.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
498.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
492.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
490.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
488.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
485.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
484.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
483.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
481.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
481.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
479.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
478.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
477.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
477.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
476.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
473.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
469.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
468.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
464.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
462.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
461.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
461.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
456.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
449.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
446.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
443.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
442.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
439.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
435.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
435.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
435.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
433.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
430.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
427.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
425.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
424.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
421.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
420.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
419.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
418.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
412.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
412.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
412.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
408.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
403.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
402.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
397.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
393.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
390.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
388.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
388.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
383.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
377.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
373.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
371.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
370.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
369.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
366.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
366.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
366.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
362.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
360.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
360.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
359.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
358.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
349.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
346.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
346.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
344.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
340.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
335.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
334.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
333.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
329.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
327.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
326.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
323.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
312.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
307.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
305.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
302.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
297.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
290.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
286.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
277.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
265.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
236.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
205.6
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 15.7
Samples: 1
Max nTPM: 15.7
Min nTPM: 15.7
Sample A
15.7
Midbrain nTPM: 32.1
Samples: 1
Max nTPM: 32.1
Min nTPM: 32.1
Sample A
32.1
Superior colliculi nTPM: 34.4
Samples: 1
Max nTPM: 34.4
Min nTPM: 34.4
Sample A
34.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
498.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 471.4
Samples: 3
Max nTPM: 563.1
Min nTPM: 360.1
Sample A
Female
563.1
Sample B
Female
360.1
Sample C
Male
491.1
Midbrain nTPM: 423.0
Samples: 3
Max nTPM: 450.1
Min nTPM: 378.0
Sample B
Female
450.1
Sample C
Male
440.8
Sample D
Male
378.0
Periaqueductal gray nTPM: 377.7
Samples: 3
Max nTPM: 426.8
Min nTPM: 315.4
Sample B
Female
391.0
Sample C
Male
426.8
Sample D
Male
315.4
Superior colliculi nTPM: 498.3
Samples: 4
Max nTPM: 602.1
Min nTPM: 425.2
Sample A
Female
602.1
Sample B
Female
425.2
Sample C
Male
501.6
Sample D
Male
464.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
610.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 610.8
Samples: 4
Max nTPM: 628.9
Min nTPM: 593.9
Sample A
621.3
Sample B
628.9
Sample C
598.9
Sample D
593.9
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
494.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 494.9
Samples: 4
Max nTPM: 515.7
Min nTPM: 449.0
Sample A
515.7
Sample A
500.5
Sample A
514.4
Sample A
449.0
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
