HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:133.4 nTPM
HPA Brain:114.5 nTPM
GTEx:133.4 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:43.5 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019004Antibody HPA073666
Glial cells MediumHigh
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 114.5
Sample id Sample description nTPM
Hippocampus
nTPM: 103.9
1898 Male, age 80, left hemisphere 120.6
1911 Female, age 85, right hemisphere 105.0
1855 Male, age 76, left hemisphere 104.1
2529 Female, age 94, left hemisphere 103.8
2148 Female, age 91, left hemisphere 100.0
2621 Female, age 67, right hemisphere 89.9
Dentate gyrus
nTPM: 87.4
2528 Male, age 74, both hemispheres 114.6
2010 Male, age 76, both hemispheres 103.8
2246 Female, age 85, both hemispheres 101.9
1927 Female, age 91, both hemispheres 90.0
2530 Female, age 94, left hemisphere 62.2
2531 Female, age 67, both hemispheres 52.2
Entorhinal gyrus
nTPM: 96.4
1938 Female, age 85, left hemisphere 134.9
2117 Female, age 91, right hemisphere 132.0
1787 Male, age 76, left hemisphere 96.4
2764 Male, age 80, right hemisphere 80.2
2686 Male, age 75, right hemisphere 77.8
2613 Female, age 94, left hemisphere 57.2
Hippocampus, CA1
nTPM: 106.3
2527 Male, age 74, both hemispheres 122.4
2082 Female, age 91, right hemisphere 109.2
1873 Female, age 85, both hemispheres 105.9
2749 Male, age 80, left hemisphere 98.0
2045 Male, age 76, both hemispheres 95.9
Hippocampus, CA2
nTPM: 103.1
2249 Male, age 74, both hemispheres 140.4
2113 Female, age 91, right hemisphere 113.8
1940 Female, age 85, left hemisphere 104.9
1892 Male, age 76, both hemispheres 99.8
1963 Male, age 80, left hemisphere 94.5
2437 Female, age 94, left hemisphere 65.6
Hippocampus, CA3
nTPM: 90.4
2436 Male, age 74, both hemispheres 120.5
1867 Male, age 76, both hemispheres 101.5
1891 Female, age 85, both hemispheres 101.3
2137 Male, age 80, left hemisphere 92.7
2620 Female, age 94, left hemisphere 68.7
2861 Female, age 67, both hemispheres 57.7
Parahippocampal cortex
nTPM: 105.8
1933 Female, age 85, both hemispheres 137.0
2250 Female, age 67, right hemisphere 128.9
2018 Male, age 76, both hemispheres 114.0
1850 Male, age 80, both hemispheres 109.7
2622 Female, age 67, right hemisphere 103.9
2245 Female, age 91, both hemispheres 103.6
2693 Female, age 94, both hemispheres 96.7
1990 Female, age 91, right hemisphere 96.4
2692 Male, age 74, both hemispheres 93.6
2532 Female, age 72, left hemisphere 74.2
Perirhinal gyrus
nTPM: 114.5
1847 Female, age 91, left hemisphere 136.2
1841 Female, age 85, right hemisphere 127.4
1794 Male, age 80, right hemisphere 110.1
2521 Female, age 94, right hemisphere 105.1
2848 Male, age 76, right hemisphere 93.7
Subiculum
nTPM: 102.4
2729 Female, age 91, right hemisphere 127.0
2619 Male, age 74, both hemispheres 121.1
1977 Female, age 85, both hemispheres 110.6
1901 Male, age 80, both hemispheres 90.6
2042 Male, age 76, both hemispheres 89.5
2438 Female, age 94, left hemisphere 75.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 133.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 133.4
Samples: 255

Max nTPM: 321.4
Min nTPM: 64.4
Std nTPM: 36.7
Median nTPM: 128.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 321.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 261.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 249.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 240.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 239.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 237.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 222.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 220.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 217.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 206.8
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 197.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 176.7
FF:10169-103B7 60 years, female 182.7
FF:10153-102I9 76 years, female 170.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 75.4
Pig sample Sample description nTPM
Subiculum
nTPM: 75.4
Samples: 4

Max nTPM: 90.6
Min nTPM: 66.4
Sample A Female 90.6
Sample B Female 72.6
Sample C Male 66.4
Sample D Male 71.8
Dorsal hippocampus
nTPM: 67.8
Samples: 4

Max nTPM: 86.9
Min nTPM: 52.7
Sample A Female 86.9
Sample B Female 66.2
Sample C Male 65.4
Sample D Male 52.7
Entorhinal cortex
nTPM: 67.8
Samples: 4

Max nTPM: 76.4
Min nTPM: 54.7
Sample A Female 69.2
Sample B Female 70.9
Sample C Male 76.4
Sample D Male 54.7
Ventral hippocampus
nTPM: 65.1
Samples: 4

Max nTPM: 72.2
Min nTPM: 56.9
Sample A Female 68.8
Sample B Female 56.9
Sample C Male 72.2
Sample D Male 62.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 43.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.6
Samples: 4

Max nTPM: 44.2
Min nTPM: 38.3
Sample A Male 41.1
Sample B Male 38.3
Sample C Female 44.2
Sample D Female 38.8
Hippocampal formation
nTPM: 43.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 41.3
Sample A Male 45.0
Sample B Male 43.7
Sample C Female 44.2
Sample D Female 41.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
71991720 Antisense, RP_051012_03_C12, Mouse strain C57BL/6J (56 days, male) 6.9
70795910 Antisense, RP_050712_02_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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