A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
19.8
nTPM
Schmiedel:
81.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Memory B-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.2
P10809_1017
0.7
P10809_1025
0.5
P10809_1044
0.2
P10809_1063
0.8
P10809_1092
1.1
P10809_1105
0.4
Naive B-cell nTPM: 0.9
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1011
1.2
P10809_1029
0.2
P10809_1048
0.0
P10809_1067
2.0
P10809_1091
0.7
P10809_1104
1.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 14.6
Samples: 4
Max nTPM: 21.9
Min nTPM: 8.4
RHH5310_R3677
8.4
RHH5218_R3590
18.3
RHH5247_R3619
21.9
RHH5276_R3648
9.9
Naive B-cell nTPM: 18.0
Samples: 4
Max nTPM: 25.8
Min nTPM: 9.7
RHH5308_R3675
25.8
RHH5216_R3588
9.7
RHH5245_R3617
17.6
RHH5274_R3646
19.0
Non-switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 23.4
Min nTPM: 16.4
RHH5309_R3676
16.4
RHH5217_R3589
20.5
RHH5246_R3618
23.4
RHH5275_R3647
18.9
Plasmablast nTPM: 12.3
Samples: 4
Max nTPM: 13.8
Min nTPM: 11.1
RHH5312_R3679
11.1
RHH5220_R3592
12.2
RHH5249_R3621
13.8
RHH5278_R3650
12.1
Switched memory B-cell nTPM: 11.7
Samples: 4
Max nTPM: 19.5
Min nTPM: 5.6
RHH5311_R3678
5.6
RHH5219_R3591
8.4
RHH5248_R3620
13.4
RHH5277_R3649
19.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.9
Schmiedel sample id
TPM
Naive B-cell TPM: 81.9
Samples: 91
Max TPM: 100.0
Min TPM: 67.6
B_CELL_NAIVE_1
100.0
B_CELL_NAIVE_2
99.9
B_CELL_NAIVE_3
97.6
B_CELL_NAIVE_4
95.3
B_CELL_NAIVE_5
94.7
B_CELL_NAIVE_6
93.8
B_CELL_NAIVE_7
93.2
B_CELL_NAIVE_8
92.8
B_CELL_NAIVE_9
91.5
B_CELL_NAIVE_10
91.0
B_CELL_NAIVE_11
90.8
B_CELL_NAIVE_12
90.1
B_CELL_NAIVE_13
88.9
B_CELL_NAIVE_14
88.7
B_CELL_NAIVE_15
88.5
B_CELL_NAIVE_16
88.2
B_CELL_NAIVE_17
88.1
B_CELL_NAIVE_18
88.0
B_CELL_NAIVE_19
87.8
B_CELL_NAIVE_20
87.6
B_CELL_NAIVE_21
87.2
B_CELL_NAIVE_22
86.5
B_CELL_NAIVE_23
86.2
B_CELL_NAIVE_24
86.1
B_CELL_NAIVE_25
85.8
B_CELL_NAIVE_26
85.7
B_CELL_NAIVE_27
85.6
B_CELL_NAIVE_28
85.6
B_CELL_NAIVE_29
85.6
B_CELL_NAIVE_30
85.0
B_CELL_NAIVE_31
84.7
B_CELL_NAIVE_32
84.4
B_CELL_NAIVE_33
84.2
B_CELL_NAIVE_34
84.0
B_CELL_NAIVE_35
83.9
B_CELL_NAIVE_36
83.9
B_CELL_NAIVE_37
83.8
B_CELL_NAIVE_38
83.8
B_CELL_NAIVE_39
83.7
B_CELL_NAIVE_40
83.6
B_CELL_NAIVE_41
83.5
B_CELL_NAIVE_42
82.6
B_CELL_NAIVE_43
82.3
B_CELL_NAIVE_44
81.3
B_CELL_NAIVE_45
81.2
B_CELL_NAIVE_46
81.1
B_CELL_NAIVE_47
81.1
B_CELL_NAIVE_48
81.0
B_CELL_NAIVE_49
81.0
B_CELL_NAIVE_50
80.8
B_CELL_NAIVE_51
80.7
B_CELL_NAIVE_52
80.5
B_CELL_NAIVE_53
80.1
B_CELL_NAIVE_54
79.3
B_CELL_NAIVE_55
79.1
B_CELL_NAIVE_56
78.9
B_CELL_NAIVE_57
78.9
B_CELL_NAIVE_58
78.8
B_CELL_NAIVE_59
78.6
B_CELL_NAIVE_60
78.2
B_CELL_NAIVE_61
78.0
B_CELL_NAIVE_62
77.9
B_CELL_NAIVE_63
77.8
B_CELL_NAIVE_64
77.8
B_CELL_NAIVE_65
77.6
B_CELL_NAIVE_66
77.2
B_CELL_NAIVE_67
77.1
B_CELL_NAIVE_68
76.9
B_CELL_NAIVE_69
76.7
B_CELL_NAIVE_70
76.3
B_CELL_NAIVE_71
76.1
B_CELL_NAIVE_72
75.9
B_CELL_NAIVE_73
75.7
B_CELL_NAIVE_74
75.6
B_CELL_NAIVE_75
75.6
B_CELL_NAIVE_76
75.5
B_CELL_NAIVE_77
75.0
B_CELL_NAIVE_78
74.6
B_CELL_NAIVE_79
74.2
B_CELL_NAIVE_80
74.2
B_CELL_NAIVE_81
73.5
B_CELL_NAIVE_82
73.5
B_CELL_NAIVE_83
73.5
B_CELL_NAIVE_84
72.9
B_CELL_NAIVE_85
72.0
B_CELL_NAIVE_86
70.8
B_CELL_NAIVE_87
70.5
B_CELL_NAIVE_88
70.2
B_CELL_NAIVE_89
69.9
B_CELL_NAIVE_90
67.8
B_CELL_NAIVE_91
67.6
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The Human Protein Atlas project is funded
