A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
17.1
nTPM
Schmiedel:
48.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1003
0.5
P10809_1020
0.0
P10809_1039
0.7
P10809_1058
1.0
P10809_1080
0.5
P10809_1107
0.6
Intermediate monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1004
0.3
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.2
P10809_1108
0.0
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1005
0.5
P10809_1053
0.6
P10809_1072
0.0
P10809_1082
0.4
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.1
Monaco sample
nTPM
Classical monocyte nTPM: 17.1
Samples: 4
Max nTPM: 22.2
Min nTPM: 11.0
RHH5313_R3680
22.2
RHH5221_R3593
20.2
RHH5250_R3622
11.0
RHH5279_R3651
15.0
Intermediate monocyte nTPM: 9.6
Samples: 4
Max nTPM: 15.5
Min nTPM: 5.3
RHH5314_R3681
10.4
RHH5222_R3594
7.4
RHH5251_R3623
15.5
RHH5280_R3652
5.3
Non-classical monocyte nTPM: 6.6
Samples: 4
Max nTPM: 8.6
Min nTPM: 4.3
RHH5315_R3682
4.3
RHH5223_R3595
7.3
RHH5252_R3624
6.0
RHH5281_R3653
8.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.0
Schmiedel sample id
TPM
Classical monocyte TPM: 48.1
Samples: 91
Max TPM: 60.2
Min TPM: 37.2
MONOCYTES_1
60.2
MONOCYTES_2
58.7
MONOCYTES_3
58.3
MONOCYTES_4
57.9
MONOCYTES_5
57.4
MONOCYTES_6
57.1
MONOCYTES_7
56.9
MONOCYTES_8
56.2
MONOCYTES_9
55.4
MONOCYTES_10
55.1
MONOCYTES_11
55.0
MONOCYTES_12
55.0
MONOCYTES_13
55.0
MONOCYTES_14
54.5
MONOCYTES_15
54.0
MONOCYTES_16
53.5
MONOCYTES_17
52.9
MONOCYTES_18
52.2
MONOCYTES_19
52.0
MONOCYTES_20
51.9
MONOCYTES_21
51.8
MONOCYTES_22
51.7
MONOCYTES_23
51.5
MONOCYTES_24
51.3
MONOCYTES_25
51.1
MONOCYTES_26
51.0
MONOCYTES_27
50.4
MONOCYTES_28
50.3
MONOCYTES_29
50.1
MONOCYTES_30
50.1
MONOCYTES_31
49.7
MONOCYTES_32
49.6
MONOCYTES_33
49.5
MONOCYTES_34
49.5
MONOCYTES_35
49.5
MONOCYTES_36
49.3
MONOCYTES_37
49.3
MONOCYTES_38
49.2
MONOCYTES_39
48.9
MONOCYTES_40
48.5
MONOCYTES_41
48.2
MONOCYTES_42
48.0
MONOCYTES_43
47.8
MONOCYTES_44
47.5
MONOCYTES_45
47.3
MONOCYTES_46
47.3
MONOCYTES_47
47.2
MONOCYTES_48
47.2
MONOCYTES_49
46.9
MONOCYTES_50
46.8
MONOCYTES_51
46.7
MONOCYTES_52
46.7
MONOCYTES_53
46.6
MONOCYTES_54
46.3
MONOCYTES_55
46.2
MONOCYTES_56
46.0
MONOCYTES_57
45.8
MONOCYTES_58
45.8
MONOCYTES_59
45.7
MONOCYTES_60
45.6
MONOCYTES_61
45.2
MONOCYTES_62
45.1
MONOCYTES_63
45.1
MONOCYTES_64
44.7
MONOCYTES_65
44.7
MONOCYTES_66
44.4
MONOCYTES_67
44.4
MONOCYTES_68
44.3
MONOCYTES_69
44.1
MONOCYTES_70
44.0
MONOCYTES_71
43.9
MONOCYTES_72
43.8
MONOCYTES_73
43.7
MONOCYTES_74
43.7
MONOCYTES_75
43.4
MONOCYTES_76
43.3
MONOCYTES_77
42.9
MONOCYTES_78
42.9
MONOCYTES_79
42.8
MONOCYTES_80
42.6
MONOCYTES_81
42.5
MONOCYTES_82
42.3
MONOCYTES_83
41.9
MONOCYTES_84
41.8
MONOCYTES_85
41.2
MONOCYTES_86
41.1
MONOCYTES_87
41.0
MONOCYTES_88
40.6
MONOCYTES_89
38.9
MONOCYTES_90
38.2
MONOCYTES_91
37.2
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Non-classical monocyte TPM: 15.0
Samples: 90
Max TPM: 21.5
Min TPM: 9.6
M2_1
21.5
M2_2
20.4
M2_3
19.8
M2_4
19.4
M2_5
19.1
M2_6
18.4
M2_7
18.3
M2_8
18.0
M2_9
17.8
M2_10
17.8
M2_11
17.6
M2_12
17.6
M2_13
17.4
M2_14
17.2
M2_15
17.2
M2_16
17.2
M2_17
17.1
M2_18
17.1
M2_19
16.9
M2_20
16.9
M2_21
16.7
M2_22
16.7
M2_23
16.6
M2_24
16.5
M2_25
16.4
M2_26
16.3
M2_27
16.2
M2_28
16.2
M2_29
16.1
M2_30
16.1
M2_31
16.1
M2_32
16.0
M2_33
16.0
M2_34
16.0
M2_35
15.9
M2_36
15.9
M2_37
15.8
M2_38
15.7
M2_39
15.6
M2_40
15.5
M2_41
15.4
M2_42
15.3
M2_43
15.3
M2_44
15.2
M2_45
15.1
M2_46
15.1
M2_47
14.9
M2_48
14.8
M2_49
14.7
M2_50
14.4
M2_51
14.3
M2_52
14.3
M2_53
14.3
M2_54
14.3
M2_55
14.1
M2_56
14.1
M2_57
14.1
M2_58
14.1
M2_59
14.1
M2_60
14.0
M2_61
14.0
M2_62
13.9
M2_63
13.9
M2_64
13.9
M2_65
13.8
M2_66
13.8
M2_67
13.7
M2_68
13.5
M2_69
13.3
M2_70
13.2
M2_71
13.0
M2_72
13.0
M2_73
12.9
M2_74
12.9
M2_75
12.9
M2_76
12.8
M2_77
12.5
M2_78
12.4
M2_79
12.3
M2_80
12.2
M2_81
12.1
M2_82
12.1
M2_83
12.0
M2_84
11.9
M2_85
11.8
M2_86
11.2
M2_87
11.1
M2_88
10.8
M2_89
10.1
M2_90
9.6
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