A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
24.9
nTPM
Schmiedel:
105.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.1
P10809_1013
1.0
P10809_1033
0.1
P10809_1052
0.1
P10809_1071
0.6
P10809_1093
0.4
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Monaco sample
nTPM
NK-cell nTPM: 24.9
Samples: 4
Max nTPM: 32.3
Min nTPM: 18.9
RHH5316_R3683
25.0
RHH5224_R3596
18.9
RHH5253_R3625
32.3
RHH5282_R3654
23.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
Schmiedel sample id
TPM
NK-cell TPM: 105.3
Samples: 90
Max TPM: 160.6
Min TPM: 49.4
NK_1
160.6
NK_2
160.0
NK_3
159.0
NK_4
147.2
NK_5
143.8
NK_6
142.7
NK_7
140.9
NK_8
135.0
NK_9
134.7
NK_10
131.3
NK_11
128.3
NK_12
127.9
NK_13
127.1
NK_14
125.1
NK_15
124.7
NK_16
122.6
NK_17
121.8
NK_18
121.1
NK_19
120.8
NK_20
120.7
NK_21
120.7
NK_22
120.5
NK_23
120.3
NK_24
120.3
NK_25
120.0
NK_26
119.9
NK_27
119.8
NK_28
118.5
NK_29
117.9
NK_30
117.1
NK_31
116.7
NK_32
115.3
NK_33
114.4
NK_34
113.3
NK_35
111.1
NK_36
110.7
NK_37
110.3
NK_38
108.7
NK_39
108.5
NK_40
106.9
NK_41
103.7
NK_42
103.1
NK_43
103.0
NK_44
102.1
NK_45
100.7
NK_46
100.1
NK_47
99.5
NK_48
99.5
NK_49
99.1
NK_50
99.1
NK_51
98.9
NK_52
98.8
NK_53
98.7
NK_54
97.6
NK_55
96.2
NK_56
95.5
NK_57
95.2
NK_58
95.1
NK_59
94.5
NK_60
94.2
NK_61
93.7
NK_62
93.6
NK_63
93.1
NK_64
92.8
NK_65
91.9
NK_66
91.6
NK_67
91.5
NK_68
91.3
NK_69
91.2
NK_70
90.4
NK_71
89.8
NK_72
89.2
NK_73
88.4
NK_74
86.8
NK_75
85.8
NK_76
84.6
NK_77
84.3
NK_78
83.5
NK_79
83.1
NK_80
82.7
NK_81
80.7
NK_82
80.5
NK_83
80.0
NK_84
76.3
NK_85
75.3
NK_86
73.8
NK_87
70.1
NK_88
68.8
NK_89
65.3
NK_90
49.4
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