A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
14.1
nTPM
Schmiedel:
63.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Memory B-cell nTPM: 1.6
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.1
P10809_1017
1.0
P10809_1025
3.1
P10809_1044
3.2
P10809_1063
0.1
P10809_1092
1.2
P10809_1105
0.8
Naive B-cell nTPM: 0.8
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1011
0.0
P10809_1029
0.6
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
2.6
P10809_1104
1.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.3
Samples: 4
Max nTPM: 9.1
Min nTPM: 1.4
RHH5310_R3677
9.1
RHH5218_R3590
3.0
RHH5247_R3619
1.4
RHH5276_R3648
7.8
Naive B-cell nTPM: 6.6
Samples: 4
Max nTPM: 7.9
Min nTPM: 5.5
RHH5308_R3675
5.5
RHH5216_R3588
7.9
RHH5245_R3617
6.4
RHH5274_R3646
6.4
Non-switched memory B-cell nTPM: 10.0
Samples: 4
Max nTPM: 19.4
Min nTPM: 2.1
RHH5309_R3676
2.1
RHH5217_R3589
16.5
RHH5246_R3618
2.1
RHH5275_R3647
19.4
Plasmablast nTPM: 14.1
Samples: 4
Max nTPM: 18.3
Min nTPM: 9.5
RHH5312_R3679
9.5
RHH5220_R3592
18.3
RHH5249_R3621
15.5
RHH5278_R3650
13.1
Switched memory B-cell nTPM: 9.0
Samples: 4
Max nTPM: 11.2
Min nTPM: 4.7
RHH5311_R3678
9.5
RHH5219_R3591
10.7
RHH5248_R3620
11.2
RHH5277_R3649
4.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.9
Schmiedel sample id
TPM
Naive B-cell TPM: 63.9
Samples: 91
Max TPM: 78.4
Min TPM: 51.6
B_CELL_NAIVE_1
78.4
B_CELL_NAIVE_2
75.9
B_CELL_NAIVE_3
75.2
B_CELL_NAIVE_4
71.5
B_CELL_NAIVE_5
71.4
B_CELL_NAIVE_6
70.4
B_CELL_NAIVE_7
69.9
B_CELL_NAIVE_8
69.8
B_CELL_NAIVE_9
69.5
B_CELL_NAIVE_10
68.8
B_CELL_NAIVE_11
68.8
B_CELL_NAIVE_12
68.7
B_CELL_NAIVE_13
68.6
B_CELL_NAIVE_14
68.6
B_CELL_NAIVE_15
68.5
B_CELL_NAIVE_16
68.2
B_CELL_NAIVE_17
68.0
B_CELL_NAIVE_18
67.9
B_CELL_NAIVE_19
67.7
B_CELL_NAIVE_20
67.7
B_CELL_NAIVE_21
67.6
B_CELL_NAIVE_22
67.4
B_CELL_NAIVE_23
67.3
B_CELL_NAIVE_24
67.2
B_CELL_NAIVE_25
67.1
B_CELL_NAIVE_26
67.0
B_CELL_NAIVE_27
66.9
B_CELL_NAIVE_28
66.6
B_CELL_NAIVE_29
65.9
B_CELL_NAIVE_30
65.8
B_CELL_NAIVE_31
65.7
B_CELL_NAIVE_32
65.7
B_CELL_NAIVE_33
65.4
B_CELL_NAIVE_34
65.4
B_CELL_NAIVE_35
65.2
B_CELL_NAIVE_36
65.0
B_CELL_NAIVE_37
64.9
B_CELL_NAIVE_38
64.8
B_CELL_NAIVE_39
64.7
B_CELL_NAIVE_40
64.5
B_CELL_NAIVE_41
64.4
B_CELL_NAIVE_42
64.1
B_CELL_NAIVE_43
64.0
B_CELL_NAIVE_44
64.0
B_CELL_NAIVE_45
63.8
B_CELL_NAIVE_46
63.5
B_CELL_NAIVE_47
63.4
B_CELL_NAIVE_48
63.4
B_CELL_NAIVE_49
63.4
B_CELL_NAIVE_50
63.2
B_CELL_NAIVE_51
63.2
B_CELL_NAIVE_52
62.9
B_CELL_NAIVE_53
62.8
B_CELL_NAIVE_54
62.6
B_CELL_NAIVE_55
62.6
B_CELL_NAIVE_56
62.3
B_CELL_NAIVE_57
62.1
B_CELL_NAIVE_58
62.0
B_CELL_NAIVE_59
61.9
B_CELL_NAIVE_60
61.9
B_CELL_NAIVE_61
61.8
B_CELL_NAIVE_62
61.7
B_CELL_NAIVE_63
61.6
B_CELL_NAIVE_64
61.5
B_CELL_NAIVE_65
61.0
B_CELL_NAIVE_66
60.9
B_CELL_NAIVE_67
60.9
B_CELL_NAIVE_68
60.8
B_CELL_NAIVE_69
60.8
B_CELL_NAIVE_70
60.7
B_CELL_NAIVE_71
60.7
B_CELL_NAIVE_72
60.6
B_CELL_NAIVE_73
60.3
B_CELL_NAIVE_74
60.3
B_CELL_NAIVE_75
60.2
B_CELL_NAIVE_76
60.2
B_CELL_NAIVE_77
59.8
B_CELL_NAIVE_78
59.8
B_CELL_NAIVE_79
59.8
B_CELL_NAIVE_80
59.6
B_CELL_NAIVE_81
59.3
B_CELL_NAIVE_82
57.7
B_CELL_NAIVE_83
57.6
B_CELL_NAIVE_84
57.1
B_CELL_NAIVE_85
56.5
B_CELL_NAIVE_86
56.4
B_CELL_NAIVE_87
55.7
B_CELL_NAIVE_88
55.0
B_CELL_NAIVE_89
54.4
B_CELL_NAIVE_90
52.9
B_CELL_NAIVE_91
51.6
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