A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
14.4
nTPM
Schmiedel:
55.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 4.1
Min nTPM: 0.0
P10809_1003
1.0
P10809_1020
2.4
P10809_1039
4.1
P10809_1058
0.3
P10809_1080
0.0
P10809_1107
1.8
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.0
P10809_1004
1.6
P10809_1023
4.0
P10809_1042
0.3
P10809_1061
0.0
P10809_1081
0.3
P10809_1108
0.6
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.7
Min nTPM: 0.0
P10809_1005
2.7
P10809_1053
0.9
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
Monaco sample
nTPM
Classical monocyte nTPM: 14.4
Samples: 4
Max nTPM: 19.4
Min nTPM: 8.6
RHH5313_R3680
11.6
RHH5221_R3593
19.4
RHH5250_R3622
18.0
RHH5279_R3651
8.6
Intermediate monocyte nTPM: 13.8
Samples: 4
Max nTPM: 18.2
Min nTPM: 9.5
RHH5314_R3681
12.1
RHH5222_R3594
9.5
RHH5251_R3623
18.2
RHH5280_R3652
15.3
Non-classical monocyte nTPM: 13.1
Samples: 4
Max nTPM: 17.6
Min nTPM: 10.1
RHH5315_R3682
10.1
RHH5223_R3595
12.4
RHH5252_R3624
12.4
RHH5281_R3653
17.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.2
Schmiedel sample id
TPM
Classical monocyte TPM: 55.2
Samples: 91
Max TPM: 75.7
Min TPM: 41.4
MONOCYTES_1
75.7
MONOCYTES_2
74.8
MONOCYTES_3
74.6
MONOCYTES_4
74.0
MONOCYTES_5
72.7
MONOCYTES_6
72.3
MONOCYTES_7
70.5
MONOCYTES_8
68.5
MONOCYTES_9
66.3
MONOCYTES_10
66.2
MONOCYTES_11
65.5
MONOCYTES_12
65.4
MONOCYTES_13
65.4
MONOCYTES_14
65.0
MONOCYTES_15
64.7
MONOCYTES_16
64.4
MONOCYTES_17
63.3
MONOCYTES_18
62.4
MONOCYTES_19
62.4
MONOCYTES_20
62.4
MONOCYTES_21
61.9
MONOCYTES_22
61.7
MONOCYTES_23
60.9
MONOCYTES_24
60.7
MONOCYTES_25
60.4
MONOCYTES_26
60.2
MONOCYTES_27
59.6
MONOCYTES_28
59.6
MONOCYTES_29
59.5
MONOCYTES_30
59.0
MONOCYTES_31
59.0
MONOCYTES_32
58.5
MONOCYTES_33
58.3
MONOCYTES_34
57.8
MONOCYTES_35
57.7
MONOCYTES_36
57.6
MONOCYTES_37
57.5
MONOCYTES_38
57.4
MONOCYTES_39
57.3
MONOCYTES_40
57.2
MONOCYTES_41
57.1
MONOCYTES_42
56.3
MONOCYTES_43
55.8
MONOCYTES_44
54.7
MONOCYTES_45
54.6
MONOCYTES_46
54.1
MONOCYTES_47
53.9
MONOCYTES_48
53.6
MONOCYTES_49
53.3
MONOCYTES_50
53.1
MONOCYTES_51
52.8
MONOCYTES_52
52.6
MONOCYTES_53
52.3
MONOCYTES_54
52.0
MONOCYTES_55
51.2
MONOCYTES_56
50.3
MONOCYTES_57
50.3
MONOCYTES_58
50.0
MONOCYTES_59
49.9
MONOCYTES_60
49.0
MONOCYTES_61
49.0
MONOCYTES_62
48.7
MONOCYTES_63
48.7
MONOCYTES_64
48.4
MONOCYTES_65
47.8
MONOCYTES_66
47.7
MONOCYTES_67
47.6
MONOCYTES_68
47.5
MONOCYTES_69
47.3
MONOCYTES_70
47.0
MONOCYTES_71
46.8
MONOCYTES_72
46.7
MONOCYTES_73
46.6
MONOCYTES_74
46.4
MONOCYTES_75
46.3
MONOCYTES_76
46.1
MONOCYTES_77
45.9
MONOCYTES_78
45.8
MONOCYTES_79
45.7
MONOCYTES_80
45.6
MONOCYTES_81
45.3
MONOCYTES_82
45.3
MONOCYTES_83
45.2
MONOCYTES_84
45.1
MONOCYTES_85
44.3
MONOCYTES_86
44.1
MONOCYTES_87
43.8
MONOCYTES_88
43.5
MONOCYTES_89
43.3
MONOCYTES_90
43.3
MONOCYTES_91
41.4
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Non-classical monocyte TPM: 55.1
Samples: 90
Max TPM: 66.4
Min TPM: 43.8
M2_1
66.4
M2_2
65.9
M2_3
65.4
M2_4
65.3
M2_5
65.1
M2_6
64.9
M2_7
64.8
M2_8
64.4
M2_9
62.9
M2_10
62.7
M2_11
61.8
M2_12
61.8
M2_13
61.2
M2_14
61.1
M2_15
60.7
M2_16
60.4
M2_17
59.6
M2_18
59.6
M2_19
58.9
M2_20
58.8
M2_21
58.7
M2_22
58.3
M2_23
58.2
M2_24
58.0
M2_25
57.5
M2_26
57.4
M2_27
57.4
M2_28
57.4
M2_29
57.0
M2_30
57.0
M2_31
56.7
M2_32
56.7
M2_33
56.6
M2_34
56.5
M2_35
56.2
M2_36
56.1
M2_37
56.1
M2_38
56.0
M2_39
55.9
M2_40
55.8
M2_41
55.8
M2_42
55.7
M2_43
55.5
M2_44
55.5
M2_45
55.2
M2_46
54.9
M2_47
54.4
M2_48
54.4
M2_49
54.3
M2_50
54.0
M2_51
53.9
M2_52
53.8
M2_53
53.8
M2_54
53.6
M2_55
53.6
M2_56
53.5
M2_57
53.5
M2_58
53.3
M2_59
53.1
M2_60
53.1
M2_61
53.0
M2_62
52.8
M2_63
52.5
M2_64
52.5
M2_65
51.9
M2_66
51.8
M2_67
51.4
M2_68
51.3
M2_69
51.1
M2_70
51.1
M2_71
50.8
M2_72
50.7
M2_73
50.6
M2_74
50.6
M2_75
50.6
M2_76
50.1
M2_77
49.7
M2_78
49.2
M2_79
49.0
M2_80
48.5
M2_81
48.0
M2_82
47.2
M2_83
47.1
M2_84
46.9
M2_85
46.3
M2_86
46.3
M2_87
46.1
M2_88
45.9
M2_89
45.7
M2_90
43.8
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